Table 3. Summary of GO terms overrepresented in differentially expressed P. lambertiana genes.

GO-ID	Term	Category	FDR
NACLR
GO:0042555	MCM complex	C	0.049359
GO:0043168	Anion binding	F	7.84E−18
GO:0005524	ATP binding	F	2.14E−09
GO:0016887	ATPase activity	F	0.004976
GO:0005034	Osmosensor activity	F	0.046233
GO:0010817	Regulation of hormone levels	P	6.04E−06
GO:0048767	Root hair elongation	P	0.006801
GO:0009809	Lignin biosynthetic process	P	0.023398
JASS
GO:0010583	Response to cyclopentenone	P	0.007481
GO:0043207	Response to external biotic stimulus	P	0.021576
GO:0051707	Response to other organism	P	0.021576
GO:0051567	Histone H3-K9 methylation	P	7.68E−09
GO:0042742	Defense response to bacterium	P	0.028652
GO:0010476	Gibberellin-mediated signaling pathway	P	0.011213
GO:0042221	Response to chemical	P	1.90E−07
Wound
GO:0006950	Response to stress	P	8.39E−09
GO:0006952	Defense response	P	2.54E−06
GO:0005911	Cell–cell junction	C	0.000132
GO:0030855	Epithelial cell differentiation	P	0.010485
GO:0060429	Epithelium development	P	0.017064
GO:0042545	Cell wall modification	P	0.035399
Reproductive tissue
GO:0009751	Response to salicylic acid	P	0.002236
GO:0010333	Terpene synthase activity	F	6.87E−14
GO:0048506	Regulation of timing of meristematic phase transition	P	0.000373
GO:0007389	Pattern specification process	P	0.002009
GO:0009955	Adaxial/abaxial pattern specification	P	0.008520
GO:0007165	Signal transduction	P	1.66E−17
GO:0050793	Regulation of developmental process	P	2.67E−05
GO:0010476	Gibberellin-mediated signaling pathway	P	0.000174

GO-ID, Gene Ontology identifier; FDR, false discovery rate; NACLR, NaCl-treated; MCM, minichromosome maintenance protein complex; C, cellular component; F, molecular function; ATP, adenosine triphosphate; P, biological process; JASS, methyljasmonate-treated.