Table 4. Variants in each accession were identified in comparison to OLin as the reference.

	Genotype	No. of Transcripts with SNPs	No. of Homozygous Variantsa	Average No. of SNPs per Transcriptb	Number of SNPs per kbc
Diploids	GKP10017	22,192	117,812	5.31	1.57
	GK10602	22,564	106,882	4.74	1.43
	K7988	21,931	122,370	5.58	1.64
	KSSc38901	21,693	117,252	5.41	1.57
	GKPSSc30076	18,475	96,241	5.21	1.28
	GKSSc30097	21,638	109,797	5.07	1.47
	K9484	24,929	168,289	6.75	2.25
	KSSc36024	24,064	157,444	6.54	2.11
Tetraploids	GKBSPSc30062	6963	14,340	2.06	0.19
	BSS56	5326	9012	1.69	0.12
	Florunner (UF439-16-10-3-2)	5557	9454	1.7	0.12
	Jupiter	1844	3318	1.8	0.04
	New Mexico Valencia C	2146	3451	1.61	0.04
	PI502111(COC155B)	5361	9468	1.77	0.12
	PI290538 (COC224)	6068	10,832	1.79	0.14
	PI268868 (COC367)	4715	8491	1.8	0.11
	PI158854 (COC559)	4306	7209	1.67	0.09
	PI648241	4669	8212	1.76	0.11
	PI648242	4084	7081	1.73	0.09
	Tamrun OL07	2263	3923	1.73	0.05
	TxAG-6	22,607	87,574	3.87	1.17

Note: OLin is not reported here as the above comparisons were made relative to OLin transcriptome.

^aNumber of homozygous SNPs present in each accession relative to OLin transcriptome.

^bAverage number of transcripts calculated using Number of homozygous SNPs/Number of transcripts in an accession.

^cSNP rate calculated based on pair-wise comparison of each accession with OLin.