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. 2016 Nov 22;8:ecurrents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6. [Version 1] doi: 10.1371/currents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6

Phylogeny of Salmonella enterica serovar Poona based on single nucleotide polymorphism (SNP) differences discovered between the isolates by whole genome sequencing (WGS) vs. phylogeny based on PFGE profiles clustering.

Fig1_large

A- Pulsed-field gel electrophoresis (PFGE) dendrogram of the California isolates; B- Maximum likelihood tree generated by California Department of Public Health (CDPH) for California outbreak isolates. Background coloring designates PFGE pattern. Red boxes designate sequences generated by CDC; C- Maximum likelihood tree generated by Centers for Disease Control and Prevention (CDC) for multistate investigation, including California. Red boxes designate selected isolates from California.