Table 1.
Log2 fold change values for BA-treated samples compared to control samples. Selected genes were retested using NanoString nCounter assay with independent samples, with the same sample number and experimental design used in the RNA-seq experiment. A dash (−) indicates changes that were not significant in a given tissue in the RNA-Seq assay (FDR of 10−4). Gene names are shown without “LOC_” prefix for brevity
| Roots | Shoot | ||||
|---|---|---|---|---|---|
| Gene | Description | RNA-seq | Nano | RNA-seq | Nano |
| Os02g51930 | cytokinin-O-glucosyltransferase 2 | 2.51 | 1.31 | - | - |
| Os07g13800 | cytokinin-N-glucosyltransferase | 1.82 | 1.74 | - | - |
| Os11g12300 | NBS-LRR disease resistance protein | 2.39 | 2.01 | - | - |
| Os11g12320 | disease resistance protein RPM1 | 2.14 | 1.86 | - | - |
| Os03g55080 | WRKY3 | 1.07 | 0.71 | - | - |
| Os05g46020 | WRKY7 | 3.829 | 2.73 | - | - |
| Os05g25770 | WRKY45 | 3.24 | 1.95 | - | - |
| Os09g25070 | WRKY62 | 4.23 | 2.42 | - | - |
| Os05g09020 | WRKY67 | 3.15 | 2.50 | - | - |
| Os07g48630 | ethylene-insensitive 3 | 1.09 | 1.14 | - | - |
| Os02g03410 | CAMK_like.12 | 2.09 | 2.12 | - | - |
| Os02g53180 | 1-aminocyclopropane-1-carboxylate oxidase | 4.01 | 3.12 | - | - |
| Os03g29410 | tyrosine protein kinase domain containing protein | 2.14 | 1.80 | - | - |
| Os03g42070 | Cyclin | −1.94 | nda | - | - |
| Os03g46440 | BTBA4 - Bric-a-Brac | 2.18 | 1.56 | - | - |
| Os06g39590 | OsIAA23 | 1.70 | 1.37 | - | - |
| Os07g11739 | cytochrome P450 | 4.20 | 1.71 | - | - |
| Os07g40630 | BRASSINOSTEROID INSENSITIVE 1 precursor | 1.75 | 1.57 | - | - |
| Os09g38210 | auxin efflux carrier component | 2.35 | 1.59 | - | - |
| Os02g13900 | BES1/BZR1 homolog protein | 1.01 | 0.80 | ||
| Os04g57720 | OsRR6 | 4.89 | 3.77 | 3.95 | 1.21 |
| Os12g43110 | OsSAUR58 | −1.41 | −2.39 | - | - |
| Os10g20260 | CSLF7 - cellulose synthase-like family F | −4.29 | −3.10 | - | - |
| Os04g44670 | AP2 domain containing protein | −2.04 | −1.60 | - | - |
| Os04g39980 | gibberellin 20 oxidase 2 | −1.66 | −1.06 | - | - |
| Os04g52670 | OsSAUR21 | 1.02 | 0.49 | 0.72 | 0.68 |
| Os07g48830 | glycosyl transferase 8 domain containing protein | 3.13 | 1.14 | −0.85 | −0.63 |
| Os11g05470 | RCN1 Centroradialis-like1 homogous to TFL1 | −2.53 | −2.75 | 2.07 | 0.53 |
| Os01g09640 | Myb transcription factor | 1.24 | 0.20 | −0.58 | −0.56 |
| Os08g42080 | ACR5 | −0.95 | −0.85 | 3.24 | 1.85 |
| Os01g55240 | gibberellin 2-beta-dioxygenase | −1.04 | −0.11 | 0.97 | −0.08 |
| Os07g06860 | gibberellin receptor GID1L2 | −1.61 | −1.62 | 2.67 | NDb |
anone detected in the cytokinin-treated sample
bnone detected in the either control or cytokinin-treated sample