Table 1. Rate constants for EcFrmR DNA interactions.
Reactiona | kf (M−1 s−1)b | kr (s−1)a | Kd (nM) | kapp (M−1 s−1) |
---|---|---|---|---|
EcFrmR + Pfrm ↔ Pfrm − EcFrmR | 13000 ± 390 | 0.0028 ± 0.000086 | 220 | — |
EcFrmR − (Zn)4 + Pfrm ↔ Pfrm − EcFrmR − (Zn)4 | 5660 ± 165 | 0.003 ± 0.000078 | 520 | — |
Pfrm − EcFrmR + HCHO → EcFrmR − HCHO + Pfrm | — | — | — | 4.2 |
Pfrm − EcFrmR − (Zn)4 + HCHO → EcFrmR − (Zn)4 − HCHO + Pfrm | — | — | — | 0.7 |
EcFrmR + PydhY ↔ PydhY − EcFrmR | 1950 ± 1000 | 0.007 ± 0.00017 | 3600 | — |
aThe BLItz data used to calculate the kinetic parameters shown are provided in Table S4. The data were fitted to a 1:1 binding model to derive kf, kr and Kd values using all the sample data simultaneously (Global fitting).
bValue and standard error.