Table 3.
Three Best-Fitting Models for Each Gene* Rules are in the same format as in Table 2 (see Methods). In this case, the genes in rows are inputs to genes in columns. The three best combinations of rules are in consecutive rows for each input; i.e., the best fit rule combination is the first row of each input block with the fit score (E) in the first row of the last block in the table. * Models are in rows, e.g., the best-fitting model for SIC1 has the input CLB5 with the rule (1 3 3), MBP1 with rule (3 1 1), and CDC6 with rule (1 2 3) corresponding to the fit error E = 0.689.
| OUTPUTS | ||||||||||||
| INPUTS | SIC1 | CLB5 | CDC20 | CLN3 | SWI6 | CLN1 | CLN2 | CLB6 | SWI4 | CDC28 | MBP1 | CDC6 |
| SIC1 | --- | 2 2 3 | 3 2 1 | 1 1 3 | ||||||||
| --- | 2 2 3 | 2 1 3 | 1 3 3 | 3 2 1 | 1 2 3 | |||||||
| --- | 2 2 3 | 2 1 3 | 1 3 3 | 3 2 1 | 1 2 3 | |||||||
| CLB5 | 1 3 3 | --- | 1 3 3 | |||||||||
| 1 3 3 | --- | 1 1 3 | ||||||||||
| 1 3 3 | --- | 1 1 3 | 3 2 1 | |||||||||
| CDC20 | 3 3 1 | --- | 3 3 2 | 3 2 1 | 1 3 3 | |||||||
| 2 3 1 | --- | 3 3 1 | ||||||||||
| 2 3 1 | --- | 3 1 1 | 1 3 3 | |||||||||
| CLN3 | 3 1 2 | --- | 3 3 1 | 2 2 3 | 3 3 2 | 1 2 3 | ||||||
| --- | 3 2 1 | 2 1 3 | 1 1 3 | |||||||||
| 3 1 3 | --- | 3 3 1 | 1 1 3 | |||||||||
| SWI6 | 1 3 1 | 3 2 1 | --- | 3 1 2 | ||||||||
| (SBF) | 1 3 1 | 3 1 1 | --- | 1 2 1 | 3 1 2 | 2 3 1 | ||||||
| 1 3 1 | 3 2 1 | --- | 1 2 3 | 3 1 1 | ||||||||
| CLN1 | 3 3 1 | --- | 1 2 3 | 1 2 3 | 1 1 2 | 3 1 1 | ||||||
| 3 2 1 | --- | 1 3 3 | 1 2 3 | 3 1 1 | ||||||||
| 1 2 3 | 3 1 1 | --- | 1 3 3 | 1 3 3 | 3 1 2 | |||||||
| CLN2 | 1 1 3 | 3 1 1 | 3 1 3 | 1 3 3 | --- | 1 1 3 | ||||||
| 1 1 3 | 3 2 1 | 3 1 3 | 1 3 3 | --- | 1 1 3 | |||||||
| 1 1 3 | 3 1 3 | 1 3 3 | --- | 1 1 3 | ||||||||
| CLB6 | 1 2 3 | 1 1 3 | 1 1 3 | --- | 1 1 3 | 1 3 3 | 3 1 3 | |||||
| 1 2 3 | 1 1 3 | 1 1 3 | 1 1 3 | --- | 1 1 3 | 1 3 3 | ||||||
| 3 3 1 | 1 1 3 | 1 1 3 | --- | 1 2 3 | 1 3 3 | |||||||
| SWI4 | --- | 3 2 1 | ||||||||||
| (SBF) | 1 1 3 | 2 3 3 | --- | 3 3 2 | ||||||||
| --- | 3 2 1 | 1 2 3 | ||||||||||
| CDC28 | 3 1 3 | --- | ||||||||||
| --- | ||||||||||||
| 3 1 2 | --- | |||||||||||
| MBP1 | 3 1 1 | 3 3 1 | 2 1 3 | 3 3 1 | --- | |||||||
| (MBF) | 3 1 1 | 2 3 1 | 1 2 3 | 3 3 1 | --- | |||||||
| 3 2 1 | 3 3 1 | 2 3 2 | 1 1 3 | 3 3 1 | 2 2 3 | --- | ||||||
| CDC6 | 1 2 3 | 1 2 3 | 1 1 3 | 3 2 3 | --- | |||||||
| 1 3 3 | 1 2 3 | 1 3 1 | 3 2 3 | 3 2 3 | --- | |||||||
| 1 2 3 | 2 2 3 | 2 1 3 | 3 2 3 | --- | ||||||||
| Fit (E) | 0.689 | 0.881 | 0.703 | 0.792 | 0.620 | 0.943 | 0.877 | 0.714 | 0.782 | 0.510 | 0.624 | 0.764 |
| 0.643 | 0.875 | 0.702 | 0.768 | 0.599 | 0.930 | 0.837 | 0.706 | 0.768 | 0.508 | 0.624 | 0.758 | |
| 0.631 | 0.852 | 0.695 | 0.746 | 0.596 | 0.916 | 0.835 | 0.705 | 0.763 | 0.498 | 0.622 | 0.720 | |