TABLE 1.
Deduced functions of ORFs.
ORF | Putative function | Size (no. of amino acids) | Homologues
|
||||
---|---|---|---|---|---|---|---|
Gene | Deduced role | SM/ID of producta | Origin | GenBank nucleotide accession no. | |||
1 | Transport | 417 | Integral membrane ion antiporter | 54/42 | Amycolatopsis orientalis | AL078635 | |
2 | Regulation | 934 | pikD | Transcriptional activator | 44/33 | Streptomyces venezuelae | AF079139 |
3 | Halogenase | 547 | pmC | Halogenase | 59/43 | Myxococcus fulvus | AF161185 |
4 | PKS | 2,057 | epoD | PKS | 42/32 | Polyangium cellulosum | AF217189 |
5 | PKS | 3,112 | mxaC | PKS | 50/37 | Stigmatella aurantiaca | AF319998 |
6 | PKS | 828 | stiG | PKS | 58/45 | Stigmatella aurantiaca | AJ421825 |
7 | Thioesterase | 268 | rifR | Thioesterase | 44/32 | Amycolatopsis mediterranei | AF040570 |
8 | Flavin reductase | 173 | rebF | Flavin reductase | 55/47 | Lechevalieria aerocolonigenes | AJ414559 |
9 | Adenylation enzyme | 377 | tycA | NRPSb adenylation domain | 59/43 | Brevibacillus parabrevis | P09095 |
10 | Starter unit for biosynthesis | 437 | SCGD3.18c | BCDH E1 α subunit | 73/61 | S. coelicolor A3(2) | AL939117 |
11 | Starter unit for biosynthesis | 381 | SCGD3.17c | BCDH E1 β subunit | 84/77 | S. coelicolor A3(2) | AL939117 |
12 | Starter unit for biosynthesis | 442 | SCGD3.16c | BCDH E2 subunit | 57/50 | S. coelicolor A3(2) | AL939117 |
13 | Starter unit for biosynthesis | 628 | SCAH10.35c | Oxidoreductase α subunit | 89/86 | S. coelicolor A3(2) | AL939127 |
14 | Starter unit for biosynthesis | >210 | SCD20.12c | Oxidoreductase β subunit | 97/96 | S. coelicolor A3(2) | AL939120 |
SM/ID, percent similarity/percent identity of amino acid sequences.
NRPS, nonribosomal peptide synthase.