Table 1.

Expression data ratios between algae in co-culture and in axenic culture. Select genes involved in stress response and programmed cell death show up-regulation over time.

DOI: http://dx.doi.org/10.7554/eLife.17473.011

Functional group	Gene annotation	Target transcript	Day 3	Day 10	Day 17
Oxidative stress	putative L-ascorbate peroxidase	XM_005793355	1.36	3.19	6.81
Programmed cell death	putative programmed cell death protein (PDCD2)	XM_005768970	1.31	2.13	5.29
Metacaspases	putative metacaspase protein with Ca-binding EF hand domain	XM_005784588	1.31	3.30	4.54
Metacaspases	putative metacaspase protein	XM_005763016	1.05	2.32	4.39
Oxidative stress	ascorbate oxidase (AO)	XM_005775302	1.69	2.82	4.09
Oxidative stress	putative glutathione-S-transferase	XM_005761417	1.31	2.20	4.07
Metacaspases	putative metacaspase protein	XM_005791576	1.99	2.65	4.03
Programmed cell death	putative death-specific protein with Ca binding EF hand domain	XM_005778875	1.48	2.40	3.88
Programmed cell death	putative programmed cell death protein (PDCD2)	XM_005790372	1.21	2.12	3.84
Metacaspases	putative metacaspase protein	XM_005773908	1.46	2.28	3.83
Oxidative stress	glutathione synthetase (GSHS3)	XM_005760150	1.32	2.14	3.56
Oxidative stress	putative L-ascorbate peroxidase	XM_005784352	1.17	2.19	3.33
Programmed cell death	putative death-specific protein with Ca binding EF hand domain	XM_005773034	1.41	2.00	3.22
Metacaspases	putative metacaspase protein	XM_005759676	1.17	1.90	3.06
Oxidative stress	thioredoxin	XM_005761968	1.03	2.01	2.75