Table 6.
Species included in the comparative genomic analysis
| Species | Code | Lifestyle | Class | Order | Family | Reference |
|---|---|---|---|---|---|---|
| Botrytis cinerea | Bc | Pathogen (necrotroph) | Leotiomycetes | Helotiales | Sclerotiniaceae | [55] |
| Sclerotinia sclerotiorum | Ssc | Pathogen (necrotroph) | Leotiomycetes | Helotiales | Sclerotiniaceae | [55] |
| Blumeria graminis | Bg | Pathogen (obligate biotroph) | Leotiomycetes | Erysiphales | Erysiphaceae | [124] |
| Marssonina brunnea | Mb | Pathogen (hemi-biotroph) | Leotiomycetes | Helotiales | Dermateaceae | [125] |
| Fusarium oxysporum f. sp. lycopersici | Fo | Pathogen (hemi-biotroph) | Sordariomycetes | Hypocreales | Nectriaceae | [56] |
| Aspergillus flavus | Af | Saprophyte (soil & rhizosphere) | Eurotiomycetes | Eurotiales | Trichocomaceae | [126] |
| Trichoderma reesei | Tr | Saprophyte (soil)a | Sordariomycetes | Hypocreales | Hypocreaceae | [127] |
| Chaetomium globosum | Chg | Saprophyte (soil/plant debris) | Sordariomycetes | Sordariales | Chaetomiaceae | [128] |
| Penicillium chrysogenum | Pc | Saprophyte (soil) | Eurotiomycetes | Eurotiales | Aspergillaceae | [129] |
| Glarea lozoyensis | Gl | Saprophyte(soil) b | Leotiomycetes | Helotiales | Helotiaceae | [130] |
| Oidiodendron maius | Om | Saprophyte (peat bog)/ericoid mycorrhizal | Leotiomycetes | Leotiomycetes incertae sedis | Myxotrichaceae | [32] |
| Tuber melanosporum | Tm | Ectomycorrhizae | Pezizomycetes | Pezizales | Tuberaceae | [66] |
| Cenoccocum geophilum | Ceg | Ectomycorrhizae | Dothideomycetes | Pleosporomycetidae incertae sedis | Gloniaceae | [131] |
| Phialocephala subalpina | Ps | Root endophyte | Leotiomycetes | Helotiales | Dermateaceae | this paper |
ain contrast to other Trichoderma species, T. reesei does not show mycoparasitism
bITS sequences from environmental samples often derived from soil/rhizosphere