Data collection (APS-SerCAT) |
Wavelength (Å) |
1.0722 |
0.97932 (Se peak) |
Resolution limit (Å) |
2.1 |
3.5 |
No. of measured reflections (last shella) |
97 523 (12874) |
71 697 (5795) |
No. of unique reflections (last shell) |
25 594 (3464) |
11 212 (900) |
Redundancy (last shell) |
3.8 (3.7) |
6.4 (6.43) |
Completeness (last shell) (%) |
94.3 (99.1) |
99.6 (100) |
I/sigma (last shell) |
6.95 (2.74) |
21.65 (17.0) |
Rsym (last shell) (%)b
|
11.6 (55.0) |
6.5 (8.7) |
Space group |
R32 |
R32 |
Unit cell dimensions (Å) |
a=111.06 |
a=110.84 |
|
c=193.69 |
c=194.5 |
No. of complexes in asymmetric unitc
|
2 |
2 |
|
|
|
SAD phasing |
Phasing resolution (Å) |
|
3.5 |
Overall figure of meritd
|
|
0.33/0.81 |
|
|
|
Refinement |
Resolution range (Å) |
2.1 |
|
Rwork/Rfree (%) |
24.2 (26.2) |
|
No. of reflections for refinement |
24 357 (89.7%) |
|
No. of reflections for testing set |
1236 (4.6%) |
|
No. of protein residues/non-H atoms |
217/1777 |
|
No. of water molecules |
98 |
|
R.m.s.d. bond lengths (Å) |
0.0057 |
|
R.m.s.d. bond angles (deg) |
0.9184 |
|
R.m.s.d. improper angles (deg) |
0.6712 |
|
R.m.s.d. dihedral angles (deg) |
15.995 |
|
Residues in favored Ramachandran region |
98% |
|
Residues in additionally allowed region |
2% |
|
Residues in generously or disallowed region |
0 |
|
Estimated coordinate error (Å) |
0.29 |
|
|
|
|
Average B-factor for |
|
|
Main-chain atoms |
49.9 |
|
Side-chain atoms |
54.8 |
|
Water molecules |
70.9 |
|
All atoms |
53.8 |
|
|
|
|
B value r.m.s.d. for |
|
|
Bonded main-chain atoms |
1.689 |
|
Bonded side-chain atoms |
2.875 |
|
Angle main-chain atoms |
2.587 |
|
Angle side-chain atoms
|
4.472
|
|
a Last shell is 2.2–2.1 Å for native data and 3.6–3.5 Å for Se-Met SAD data; all reflections used. |
b Rsym=∑∣I−〈I〉∣/∑I. |
c Each complex has two molecules with one from PALS1-L27N and the other from PATJ-L27. |
d Overall figure of merit after SOLVE/Resolve at the same resolution. |