Table 2.
Summary of data collection, phasing, and refinement statistics
Native | Se-Met | |
---|---|---|
Data collection (APS-SerCAT) | ||
Wavelength (Å) | 1.0722 | 0.97932 (Se peak) |
Resolution limit (Å) | 2.1 | 3.5 |
No. of measured reflections (last shella) | 97 523 (12874) | 71 697 (5795) |
No. of unique reflections (last shell) | 25 594 (3464) | 11 212 (900) |
Redundancy (last shell) | 3.8 (3.7) | 6.4 (6.43) |
Completeness (last shell) (%) | 94.3 (99.1) | 99.6 (100) |
I/sigma (last shell) | 6.95 (2.74) | 21.65 (17.0) |
Rsym (last shell) (%)b | 11.6 (55.0) | 6.5 (8.7) |
Space group | R32 | R32 |
Unit cell dimensions (Å) | a=111.06 | a=110.84 |
c=193.69 | c=194.5 | |
No. of complexes in asymmetric unitc | 2 | 2 |
SAD phasing | ||
Phasing resolution (Å) | 3.5 | |
Overall figure of meritd | 0.33/0.81 | |
Refinement | ||
Resolution range (Å) | 2.1 | |
Rwork/Rfree (%) | 24.2 (26.2) | |
No. of reflections for refinement | 24 357 (89.7%) | |
No. of reflections for testing set | 1236 (4.6%) | |
No. of protein residues/non-H atoms | 217/1777 | |
No. of water molecules | 98 | |
R.m.s.d. bond lengths (Å) | 0.0057 | |
R.m.s.d. bond angles (deg) | 0.9184 | |
R.m.s.d. improper angles (deg) | 0.6712 | |
R.m.s.d. dihedral angles (deg) | 15.995 | |
Residues in favored Ramachandran region | 98% | |
Residues in additionally allowed region | 2% | |
Residues in generously or disallowed region | 0 | |
Estimated coordinate error (Å) | 0.29 | |
Average B-factor for | ||
Main-chain atoms | 49.9 | |
Side-chain atoms | 54.8 | |
Water molecules | 70.9 | |
All atoms | 53.8 | |
B value r.m.s.d. for | ||
Bonded main-chain atoms | 1.689 | |
Bonded side-chain atoms | 2.875 | |
Angle main-chain atoms | 2.587 | |
Angle side-chain atoms |
4.472 |
|
a Last shell is 2.2–2.1 Å for native data and 3.6–3.5 Å for Se-Met SAD data; all reflections used. | ||
b Rsym=∑∣I−〈I〉∣/∑I. | ||
c Each complex has two molecules with one from PALS1-L27N and the other from PATJ-L27. | ||
d Overall figure of merit after SOLVE/Resolve at the same resolution. |