Table 3. Overlapped genes that identified by both ZH_p and di for different goat breeds.

Candidate gene	Chr	Annotation	ZHp	di
Taihang Black
ASIP	13	agouti signaling protein	−5.60	55.46
KITLG	5	KIT ligand	−5.83	43.56
MSANTD1, HTT	6	Myb/SANT DNA binding domain containing 1, huntingtin	−4.96	16.85
GNA11	7	G protein subunit alpha 11	−5.30	12.87
OSTM1	9	G protein subunit alpha 11	−4.94	16.35
Guizhou Small
TBX15	3	T-box 15	−5.04	24.67
DGCR8	17	DGCR8 Microprocessor Complex Subunit	−6.06	32.60
CDC25A	22	cell division cycle 25A	−4.99	37.99
RDH16	5	retinol dehydrogenase 16	−6.06	37.14
Inner Mongolian Cashmere
LHX2	11	LIM homeobox 2	−4.98	23.34
FGF9	12	fibroblast growth factor 9	−4.93	13.80
WNT2	4	Wnt family member 2	−4.29	19.04
MC1R	18	melanocortin 1 receptor	−5.52	13.73
FGF5	6	fibroblast growth factor 5	−6.12	15.68
Tibetan goat
CDK2	5	cyclin dependent kinase 2	−6.45	39.75
SOCS2	5	suppressor of cytokine signaling 2	−5.25	33.18
NOXA1	11	NADPH oxidase activator 1	−4.53	22.83
ENPEP	6	glutamyl aminopeptidase	−5.65	17.41
KITLG	5	KIT ligand	−5.82	15.06
FGF5	6	fibroblast growth factor 5	−6.29	16.77