Table 1. GRM3 SNP markers.
SNP | Coding, strand* | Frequency allele 2 | dbSNP or celera ID | Distance from M1† |
---|---|---|---|---|
1 | T/G | 0.32 | rs187993 | 0 |
2 | C/T | 0.17 | hCV2627921 | 50,740 |
3 | C/T | 0.30 | rs917071 | 90,101 |
4 | A/G | 0.27 | hCV11245618 | 139,795 |
5 | C/T | 0.07 | N/A | 152,307 |
6 | A/T | 0.27 | rs1468412 | 169,771 |
7 | G/A | 0.25 | hCV2536213 | 211,987 |
Allele 2 frequencies are from Caucasian controls. Within each group, genotypes (not shown) for each marker were in Hardy-Weinberg equilibrium. Moderate linkage disequilibrium was observed across this region.
Coding strand format, e.g., SNP1 T coding-common-1 allele, which means, for SNP1, the T allele is the common allele on the coding strand and is referred to as allele 1.
UCSC Genome Bioinformatics, www.genome.ucsc.edu/index.html, freeze date April 2003.