TABLE 1.
Bacterial strains and plasmids used in this study
| Strain, plasmid, or cosmid | Descriptiona | Reference or source |
|---|---|---|
| Bacillus sp. strain ATCC 27860 | Indicator strain for alanyl clavam bioassay | 34 |
| K. pneumoniae ATCC 15380 | Indicator strain for clavulanic acid bioassay | 35 |
| S. clavuligerus NRRL3585 | Wild type | National Regional Research Laboratory (NRRL) |
| S. clavuligerus ΔccaR::tsrA | ccaR deletion mutant; ccaR replaced by tsr; Tsrr | 2 |
| S. clavuligerus C1G | Contains the egfp reporter gene fused to the ceaS1 promoter; integrated at the φC31 attB site in the chromosome | This study |
| S. clavuligerus C2G | Contains the egfp reporter gene fused to the ceaS2 promoter; integrated at the φC31 attB site in the chromosome | This study |
| Plasmids and cosmids | ||
| K6L2 | pLAFR3-based cosmid clone spanning the clavulanic acid gene cluster | 1 |
| p2.8-18 | pUC18 containing the 5′ end of ceaS1 and upstream region | 42 |
| p5.7 | pUC118 containing blsI, pahI, and flanking sequences | 42 |
| pBB5.3A | pUC119 containing the 5.3-kb BamHI/BglII fragment encompassing pcbR and ceaS2 from pTZ40; Ampr | Jensen et al., unpublished |
| pCR2.1TOPO | E. coli phagemid cloning vector for rapid cloning of PCR fragments; Ampr Kanr | Invitrogen |
| pIJ8660 | Promoterless EGFP reporter plasmid; free living in E. coli and integrates into the Streptomyces chromosome; Aprr | 41 |
| pIJ8660-ceaS2 | EGFP reporter construct; pIJ8660 containing the 707-bp BamHI/KpnI fragment from pTOPO-ceaS2-8 encompassing the ceaS2 promoter region fused to the egfp gene | This study |
| pSET152 | E. coli cloning vector; integrates into the Streptomyces chromosome; Aprr | NRRL |
| pSET-ceaS1 | EGFP reporter construct; pSET152 containing the 2.37-kb BamHI/EcoRI fragment from pTO6-ceaS1 encompassing the ceaS1 promoter fused to the egfp gene | This study |
| pTO6 | pIJ8660 with aac(3)IV replaced by aadA; Spcr | 28 |
| pTO6-ceaS1 | EGFP reporter construct; pTO6 containing the 777-bp BamHI/KpnI fragment from pTOPO-ceaS1-4 | This study |
| pTOPO-cea52-8 | pCR2.1TOPO containing a 721-bp PCR fragment encompassing the ceaS2 promoter region | This study |
| pTOPO-ceaS1-4 | pCR2.1TOPO containing a 784-bp PCR fragment encompassing the ceaS1 promoter region | This study |
| pTZ40 | pTZ18R containing an ∼26-kb BamHI/PstI fragment from cosmid K6L2 spanning the clavulanic acid gene cluster; Ampr | Jensen et al., unpublished |
Ampr, ampicillin resistance; Aprr, apramycin resistance; Kanr, kanamycin resistance, Spcr, spectinomycin resistance; Tsrr, thiostrepton resistance.