TABLE 2.
Oligonucleotide primers used in this study
Primer name | Sequence (5′→3′)a | Descriptionb |
---|---|---|
CAN 122 | GGCCACCGCGACCTGCTGC | Reverse primer hrdB RT-PCR |
CAN 123 | CGGCCAAGCGCACCACTACC | Forward primer hrdB RT-PCR |
ceaS1-S1-For | TCATGAATTCCGGTGGACGGAAGGGGACGG | Forward primer for ceaS1 S1 probe |
ceaS1-PR-EX | ATGGCTTTCGCGGTCGTGGT | Reverse primer for ceaS1 S1 probe and primer extension |
ceaS2-S1-For | TGGATCCGTCGCGAATCCAGGGAAGCCGAGC | Forward primer for ceaS2 S1 probe |
ceaS2-PR-EX | GGGCGGTCGATACACGGG | Reverse primer for ceaS2 S1 probe and primer extension |
bls1-S1-For | TCGGATTAATACCTCGCTGCTCGCCGCCCTCAC | Forward primer for bls1 S1 probe |
bls1-S1-Rev | GGTCGGGGCCGGGCATGGTGAA | Reverse primer for bls1 S1 probe |
pah1-S1-For | CCAGATTAATGCGGCGCGGACGGTGCAG | Forward primer for pah1 S1 and Northern probe |
pah1-S1-Rev | CGGGGAGACGGCGGTGGACA | Reverse primer for pah1 S1 and Northern probe |
pah1-UP-Rev | CGCGGCTGCCCCTCCCTC | Reverse primer for pah1 S1 probe |
ceaS1-RT-For | GCGCAGTCCGAGTCGTAC | Forward primer ceaS1 RT-PCR |
ceaS1-RT-Rev | TTGGCGGTGTAGGTGGTGAC | Reverse primer ceaS1 RT-PCR |
ceaS2-RT-For | AGGCCGCGTCGATTCTCTTC | Forward primer ceaS2 RT-PCR |
ceaS2-RT-Rev | CGGCGGGTTGGGGACGGT | Reverse primer ceaS2 RT-PCR |
KTA-ceaS1-For | GCGGGATCCGGGCGGTCAGCACGGT | Forward primer for cloning ceaS1 promoter |
KTA-ceaS1-Rev | CCGGGTACCAGGGTCGCGAAGCACG | Reverse primer for cloning ceaS1 promoter |
KTA-ceaS2-For | AACCCCAGGATCCGAGCCCCACCGTCACG | Forward primer for cloning ceaS2 promoter |
KTA-ceaS2-Rev | CGGCCGGGTACCCCAAACACCTTCCCCACAC | Reverse primer for cloning ceaS2 promoter |
Nonhomologous sequences incorporated into oligonucleotide primers are underlined, and engineered restriction sites are shown in boldface letters.
Details of the function of each oligonucleotide primer are provided in Materials and Methods.