Table 2.
GO term enrichment in megacluster analysis
| Cluster | Size | Gene ontology terms |
|---|---|---|
| 1. “Cation transporters” | 11 | Siderochrome transport (3.557e-09, 4 of 9) |
| Transition metal ion transport (5.396e-09, 5 of 32) | ||
| Di-, tri-valent inorganic cation transport (1.996e-08, 5 of 41) | ||
| 2. “Transposons” | 24 | Biological process unknown (p = 3.821e-06, 21 of 2797) |
| Ty element transposition (p = 0.0721, 2 of 63) | ||
| DNA transposition (p = 0.1001, 2 of 75) | ||
| 3. “Stress induced” | 196 | Response to stress (p = 4.745e-10, 35 of 344) |
| Response to external stimulus (p = 1.573e-05, 23 of 247) | ||
| Response to biotic stimulus (p = 1.643e-05, 11 of 55) | ||
| 4. “Glycolysis, phosphate induced” | 10 | Glycolysis (p = 8.133e-20, 8 of 18) |
| Glucose catabolism (p = 2.007e-18, 8 of 25) | ||
| Hexose catabolism (p = 2.007e-18, 8 of 25) | ||
| 5. “TCA cycle, phosphate induced” | 10 | Tricarboxylic acid cycle (1.347e-20, 8 of 15) |
| Main pathways of carbohydrate metabolism (p = 1.527e-14, 8 of 68) | ||
| Energy derivation by oxidation of organic compounds (p = 2.520e-13, 9 of 180) | ||
| 6. “Leucine induced, sulfate repressed” | 50 | Amino acid metabolism (p = 1.478e-32, 27 of 145) |
| Amine metabolism (p = 9.000e-31, 27 of 167) | ||
| Branched chain family amino acid biosynthesis (p = 3.971e-16, 9 of 13) | ||
| 7. “Leucine induced” | 56 | Organic acid metabolism (p = 4.215e-07, 13 of 225) |
| Carboxylic acid metabolism (p = 4.215e-07, 13 of 225) | ||
| Water-soluble vitamin metabolism (p = 0.0005, 6 of 68) | ||
| 8. “Phosphate induced” | 6 | Vacuole fusion (non-autophagic) (p = 3.557e-4, 2 of 15) |
| Membrane fusion (p = 1.670e-3, 2 of 32) | ||
| Phosphorus metabolism (p = 0.04236, 2 of 163) | ||
| 9. “Sulfate induced, sulfur related” | 20 | Sulfur metabolism (p = 6.503e-21, 12 of 50) |
| Sulfur amino acid metabolism (p = 2.099e-16, 9 of 29) | ||
| Methionine metabolism (p = 5.535e-13, 7 of 20) | ||
| 10. “Sulfate induced, miscellaneous” | 24 | Sulfur amino acid metabolism (p = 0.03689, 2 of 29) |
| Sulfur metabolism (p = 0.1069, 2 of 50) | ||
| Biological process unknown (p = 0.6016, 13 of 2797) | ||
| 11. “Stress repressed, ribosome assembly” | 196 | Ribosome biogenesis (p = 7.216e-17, 31 of 157) |
| Transcription from Pol I promoter (p = 5.047e-15, 29 of 155) | ||
| rRNA processing (p = 2.028e-10, 22 of 127) | ||
| 12. “Stress repressed, ribosomal mRNA” | 126 | Protein biosynthesis (p = 3.876e-100, 114 of 759) |
| Macromolecule biosynthesis (p = 1.394e-99, 114 of 767) | ||
| Biosynthesis (p = 7.578e-80, 114 of 1120) | ||
| 13. “Uracil induced” | 10 | Pyrimidine base biosynthesis (p = 4.786e-06, 3 of 13) |
| Pyrimidine base metabolism (p = 7.604e-06, 3 of 15) | ||
| Nucleobase biosynthesis (p = 1.615e-05, 3 of 19) | ||
| 14. “Miscellaneous” | 8 | Glycerophospholipid biosynthesis (p = 4.990e-3, 2 of 30) |
| Glycerophospholipid metabolism (p = 6.422e-3, 2 of 34) | ||
| Lipid metabolism (p = 9.817e-3, 3 of 190) |
TCA, tricarboxylic acid.