Table 2.
Examples of how performance evaluation metrics were calculated
| Example # | Character | GSM value | # GSM values | Extracted value | # extracted values | Rigid hit score | Relaxed hit score |
|---|---|---|---|---|---|---|---|
| 1 | %G + C | 55.2 │ mol% | 1 | 55.2 │ mol% | 1 | 1 | 1 |
| 2 | Organic Compounds NOT Used or NOT Hydrolyzed | esculin | 1 | Neither lactate nor pyruvate | 1 | 0 | 0 |
| 3 | Cell Shape | short plump │ rods | 1 | plump │ rods # short | 2 | 0.5 | 1 |
| 4 | Motility | not │ motile by gliding | 1 | not │ motile | 1 | 0.5 | 0.5 |
| 5 | Fermentation Substrates Used | arbutin # salicin # D-raffinose # D-mannose # sucrose # melibiose | 6 | melibiose # sucrose # D-mannose # D-raffinose # salicin # Most strains ferment arbutin | 6 | 5.5 | 6 |
| Total | 10 | 11 | 7.5 | 8.5 |
Rigid and relaxed hit scores measuring the match between extracted values and gold standard matrix (GSM) values, illustrated with examples