Table 1.

Algorithms and their parameters

Algorithm	Commandline arguments	Parameters
IsoRank [28]	–K 50 –thresh 1e-5 –alpha α –maxveclen 1000000	α∈{0.3,0.5,0.6,0.7}
PINALOG [36, 77]	do not require arguments	none
L-GRAAL [23]	–a α –I 50	α∈{0.3,0.5,0.7}
MAGNA++(S 3) [34]	–m S3 –p 1000 –n 15000 –f 5 –a α –t 16	α∈{0.3,0.5,0.7}
MAGNA++(EC) [34]	–m EC –p 1000 –n 15000 –f 5 –a α –t 16	α∈{0.3,0.5,0.7}
SPINAL I [35]	–mode -I –alpha α	α∈{0.3,0.5,0.7}
SPINAL II [35]	–mode -II –alpha α	α∈{0.3,0.5,0.7}