Table 1.
Genes selected for deletion based on RNA sequencing of A. niger wild type strain cultivated on galactaric acid
| Protein ID | Galactaric acid | InterPro/KOG prediction | ||
|---|---|---|---|---|
| 0 h | 5 h | 18 h | ||
| 39114 | 1 | 5497 | 4219 | AMP-dependent synthetase and ligase, α-aminoadipate-semialdehyde dehydrogenase |
| 1090836 | 1 | 5239 | 6627 | Aldo/keto reductase |
| 1117792 | 42 | 3239 | 1050 | Alcohol dehydrogenase, zinc-binding |
| 1141260 | 132 | 805 | 747 | Short-chain dehydrogenase/reductase |
| 1121140 | 51 | 545 | 1162 | FAD-dependent oxidoreductase |
| 1146483 | 2 | 641 | 1661 | Mandelate racemase/muconate lactonizing enzyme |
| 1170646 | 1 | 260 | 164 | d-isomer specific 2-hydroxyacid dehydrogenase |
Transcript levels are presented as fragments per kilobase of exon per million fragments mapped (FPKM). The protein ID numbers refer the numbers from the Join Genome Institute, MycoCosm, A. niger ATCC 1015 v.4.0 database