Table 2.
Protocol used for analysis of serum miR-122
| (A) Preparation of the RT reaction master mix | |||
| Component | Master mix volume per 15-μL reactiona | ||
| 100 mM dNTPs (with dTTP) | 0.15 μL | ||
| MultiScribeTM Reverse Transcriptase, 50 U/μL | 1.00 μL | ||
| 10× Reverse Transcription Buffer | 1.50 μL | ||
| Rnase Inhibitor, 20 U/μL | 0.19 μL | ||
| Nuclease-free water | 4.16 μL | ||
| Total volume | 7.00 μL | ||
| (B) Performance of reverse transcription | |||
| Use the following parameter values to program the thermal cycler: | |||
| Step | Time | Temperature | |
| Hold | 30 min | 16 °C | |
| Hold | 30 min | 42 °C | |
| Hold | 5 min | 85 °C | |
| Hold | ∞ | 4 | |
| (C) Preparation of the qPCR reaction mix | |||
| Pipet the following components into each tube: | |||
| Component | Single reaction | ||
| TaqManⓇ Small RNA Assay (x20) | 1.00 μL | ||
| Product from RT reaction | 1.33 μL | ||
| TaqManⓇ Universal PCR Master Mix II (x2) | 10.00 μL | ||
| Nuclease-free water | 7.67 μL | ||
| Total volume | 20.00 μL | ||
| (D) Setting up the experiment or plate documentation and running the plate | |||
| In real-time PCR system software, create an experiment or plate document on real-time PCR system using the following parameters: | |||
| •Run Mode: Standard | |||
| •Sample Volume: 20 μL | |||
| •Thermal Cycling Conditions: | |||
| Enzyme Activation | PCR CYCLE (40 cycles) | ||
| Step | HOLD | Denature | Anneal/extend |
| Temperature | 95 °C | 95 °C | 60 °C |
| Time | 10 min | 15 s | 60 s |
aEach 15-μL RT reaction consists of 7 μL master mix, 3 μL of 5× RT primer, and 5 μL RNA sample