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. 2016 Dec 12;16:141. doi: 10.1186/s12876-016-0557-6

Table 2.

Protocol used for analysis of serum miR-122

(A) Preparation of the RT reaction master mix
Component Master mix volume per 15-μL reactiona
100 mM dNTPs (with dTTP) 0.15 μL
MultiScribeTM Reverse Transcriptase, 50 U/μL 1.00 μL
10× Reverse Transcription Buffer 1.50 μL
Rnase Inhibitor, 20 U/μL 0.19 μL
Nuclease-free water 4.16 μL
Total volume 7.00 μL
(B) Performance of reverse transcription
Use the following parameter values to program the thermal cycler:
Step Time Temperature
Hold 30 min 16 °C
Hold 30 min 42 °C
Hold 5 min 85 °C
Hold 4
(C) Preparation of the qPCR reaction mix
Pipet the following components into each tube:
Component Single reaction
TaqMan Small RNA Assay (x20) 1.00 μL
Product from RT reaction 1.33 μL
TaqMan Universal PCR Master Mix II (x2) 10.00 μL
Nuclease-free water 7.67 μL
Total volume 20.00 μL
(D) Setting up the experiment or plate documentation and running the plate
In real-time PCR system software, create an experiment or plate document on real-time PCR system using the following parameters:
•Run Mode: Standard
•Sample Volume: 20 μL
•Thermal Cycling Conditions:
Enzyme Activation PCR CYCLE (40 cycles)
Step HOLD Denature Anneal/extend
Temperature 95 °C 95 °C 60 °C
Time 10 min 15 s 60 s

aEach 15-μL RT reaction consists of 7 μL master mix, 3 μL of 5× RT primer, and 5 μL RNA sample