Table 2.
Comparison to other commonly used tools
| Enrichment analysis | Annotation analysis | Similarity analysis | Network analysis | Availability | Prioritisation | Communication | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Support multiple ontologies | Respect ontology structure | Via gene annotation | Via genomic annotations | Between genes | Between SNPs | Gene-based | SNP-based | Package | Web-app | Gene-level prioritisation | Mailing list/FAQ platform | |
| XGR | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | - | - |
| DAVID | Yes | No | - | - | - | - | - | - | No | Yes | - | Yes |
| GREAT | Yes | No | Yes | No | - | - | - | - | No | Yes | - | Yes |
| DEPICT | Yes | No | Yes | Yes | - | - | - | - | Yes | No | Yes | Yes |
| GOSemSim | - | - | - | - | Yes | No | - | - | Yes | No | - | - |
| GRAIL | - | - | - | - | - | - | No | Yes | No | Yes | Yes | - |
| dnet | Yes | Yes | - | - | - | - | Yes | No | Yes | No | - | - |
| jActiveModule | - | - | - | - | - | - | Yes | No | Yes | No | - | Yes |