. 2016 Dec 13;11(12):e0167966. doi: 10.1371/journal.pone.0167966

Table 2. List of reference sequences used for individual viruses and viroids.

Label of the vine	Virus detected	Reference sequence
G1	GLRaV-1	gi\|366898511\|ref\|NC_016509.1\| Grapevine leafroll-associated virus 1, complete genome
	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	GVA	gi\|970955222\|gb\|KR_091864.1\| Grapevine virus A, isolate CZ-Traminer, partial sequence
	GVB	gi\|294336603\|gb\|GU733707.1\| Grapevine virus B, isolate GVB-H1, complete sequence
	GRVFV	gi\|57116481\|gb\|AY706994.1\| Grapevine rupestris vein feathering virus polyprotein gene, complete cds
	GSyV-1	gi\|225908238\|ref\|NC_012484.1\| Grapevine Syrah Virus-1, complete genome
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence
G2	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	GPGV	gi\|339906182\|ref\|NC_015782.1\| Grapevine Pinot gris virus, complete genome
	GFkV	gi\|18138525\|ref\|NC_003347.1\| Grapevine fleck virus, complete genome
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence
G3	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	GPGV	gi\|339906182\|ref\|NC_015782.1\| Grapevine Pinot gris virus, complete genome
	GSyV-1	gi\|225908238\|ref\|NC_012484.1\| Grapevine Syrah Virus-1, complete genome
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence
G4	GLRaV-1	gi\|366898511\|ref\|NC_016509.1\| Grapevine leafroll-associated virus 1, complete genome
	GRSPaV	gi\|\|gb\| KX274277.1\|Grapevine rupestris stem pitting associated virus-1, isolate SK-30, complete genome
	GVA	gi\|154431134\|gb\|EU_008561.1\| Grapevine virus A, clone MT25/7, partial sequence
	GPGV	gi\|339906182\|ref\|NC_015782.1\| Grapevine Pinot gris virus, complete genome
	GRVFV	gi\|57116481\|gb\|AY706994.1\| Grapevine rupestris vein feathering virus polyprotein gene, complete cds
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence
G5	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence
G6	GLRaV-1	gi\|366898511\|ref\|NC_016509.1\| Grapevine leafroll-associated virus 1, complete genome
	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	GPGV	gi\|339906182\|ref\|NC_015782.1\| Grapevine Pinot gris virus, complete genome
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
G7	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	GPGV	gi\|339906182\|ref\|NC_015782.1\| Grapevine Pinot gris virus, complete genome
	GFkV	gi\|18138525\|ref\|NC_003347.1\| Grapevine fleck virus, complete genome
	GRVFV	gi\|57116481\|gb\|AY706994.1\| Grapevine rupestris vein feathering virus polyprotein gene, complete cds
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence
G8	GRSPaV	gi\|9630737\|ref\|NC_001948.1\|Grapevine rupestris stem pitting associated virus-1, complete genome
	GPGV	gi\|339906182\|ref\|NC_015782.1\| Grapevine Pinot gris virus, complete genome
	GRVFV	gi\|57116481\|gb\|AY706994.1\| Grapevine rupestris vein feathering virus polyprotein gene, complete cds
	HSVd	gi\|166237160\|gb\|EU382210.1\| Hop stunt viroid isolate CQ clone 3, complete genome
	GYSVd-1	gi\|323482824\|gb\|HQ222363.1\| Grapevine yellow speckle viroid 1, complete sequence