Table 3. Description of the primers and PCR conditions used for the detection of grapevine viruses.
Virus | Primers | Expected product size (bp) | PCR cycling conditions | Reference |
---|---|---|---|---|
GLRaV-1 | 5′ TGGCATCGTTGCTAAATTGAG 3′ A | 175 | 95°C/15 min, 40× (94°C/30 s, 53°C/30 s, 72°C/1 min), 72°C/10 min | [11] |
5′ AATCCTATGCGTCAGTATGC 3′ S | ||||
GRSPaV | 5′ CACATRTCATCVCCYGCAAA 3′ A | 476 | 95°C/15 min, 40× (94°C/55 s, 50°C/55 s, 72°C/55 s), 72°C/10 min | [25] |
5′ AGRYTTAGRGTRGCTAARGC 3′ S | ||||
GPGV | 5′ CTGAGAAGCATTGTCCCATC 3′ A | 303 | 95°C/15 min, 40× (94°C/55 s, 55°C/55 s, 72°C/55 s), 72°C/10 min | [13] |
5′ ATTGCGGAGTTGCCTTCAAG 3′ S | ||||
GVA | 5′ TCGAACATAACCTGTGGCTC 3′ A | 271 | 95°C/15 min, 40× (94°C/45 s, 50°C/45 s, 72°C/1 min), 72°C/10 min | [26] |
5′ GAGGTAGATATAGTAGGACCT 3′ S | ||||
GVB | 5′ GTGCTAAGAACGTCTTCACAGC 3′ A | 158 | 95°C/15 min, 40× (94°C/45 s, 50°C/45 s, 72°C/1 min), 72°C/10 min | [27] |
5′ AGTAGCCCTTCGTTTAGCCGC 3′ S | ||||
GFkV | 5′ CGACGCAGGCGTCATTGCG 3′ A | 520 | 95°C/15 min, 40× (94°C/55 s, 55°C/55 s, 72°C/55 s), 72°C/10 min | [28] |
5′ CCGTCTGCTGACCAGCCTG 3′ S | ||||
GSyV-1 | 5′ CGACGCAGGCGTCATTGCG 3′ A | 374 | 95°C/15 min, 40× (94°C/40 s, 56°C/40 s, 72°C/50 s), 72°C/10 min | [29] |
5′ CCGTCTGCTGACCAGCCTG 3′ S | ||||
GRVFV | 5′ ATGTTGGTCTTCACGTGSAC 3′ A | 266 | 95°C/15 min, 40× (94°C/40 s, 55°C/40 s, 72°C/50 s), 72°C/10 min | this study |
5′ GTCCTCGGCCCAGTGAAAA 3′ S | ||||
HSVd | 5′ GTTGGAAGACGAACCGAGAG 3′ A | 171 | 95°C/15 min, 40× (94°C/40 s, 55°C/40 s, 72°C/50 s), 72°C/10 min | this study |
5′ GGGCAACTCTTCTCAGAATCC 3′ S | ||||
GYSVd-1 | 5′ ACTTCATGGTGGTGCCGGTG 3′ A | 374 | 95°C/15 min, 40× (94°C/55 s, 55°C/55 s, 72°C/55 s), 72°C/10 min | [30] |
5′ CCAATGGGTCGCACTTGTTG 3′ S |
Primers: A antisense S sense