Table 4. Number of contigs, genome coverage, and RT-PCR detections.

There are listed total assembled mapped reads that are not normalized to 1 million reads.

Label of the vine	Virus detected	contigs identified by BLAST	reads assembled by SOAP	coverage (reads mapped to reference) %	confirmation by RT-PCR
G1	GLRaV-1	172	38 984	74	positive
	GRSPaV	113	3 208	46	positive
	GVA	71	3 052	99	positive
	GVB	83	16 856	99	positive
	GRVFV	89	4 961	33	positive
	GSyV-1	2	1 086	68	positive
	HSVd	5	1 132	90	positive
	GYSVd-1	1	805	91	positive
G2	GRSPaV	169	3 776	97	positive
	GPGV	72	9 285	98	positive
	GFkV	123	14 399	90	positive
	HSVd	4	1 423	94	positive
	GYSVd-1	4	3 273	100	positive
G3	GRSPaV	185	7 755	100	positive
	GPGV	81	14 812	98	positive
	GSyV-1	37	1 292	24	positive
	HSV-1	6	1 313	100	positive
	GYSVd-1	3	2 483	100	positive
G4	GLRaV-1	153	35 016	78	positive
	GRSPaV	71	1 222	25	positive
	GVA	58	5 900	100	positive
	GPGV	2	238	18	positive
	GRVFV	120	4 580	29	positive
	HSVd	6	1 297	100	positive
	GYSVd-1	6	2 800	100	positive
G5	GRSPaV	68	10 237	100	positive
	HSV	199	1 395	90	positive
	GYSVd-1	0	95	100	positive
G6	GLRaV-1	162	30 117	74	positive
	GRSPaV	3	6 111	99	positive
	GPGV	19	4 003	99	positive
	HSV	7	1 355	100	positive
G7	GRSPaV	35	4 288	94	positive
	GPGV	39	5 942	95	positive
	GFkV	60	30 408	97	positive
	GRVFV	23	9 376	22	positive
	HSVd	9	1 384	100	positive
	GYSV-1	8	2 331	100	positive
G8	GRSPaV	18	2 935	97	positive
	GPGV	24	4 918	98	positive
	GRVFV	54	9 560	29	positive
	HSVd	6	1 025	100	positive
	GYSVd-1	9	2 199	100	positive