Table 1.

Details on the raw and quality filtered 2×50nt RNA-seq data for Triops newberryi. Reads that were < 25 base pairs after quality trimming were discarded from use in the transcriptome assembly.

Sample	Paired-end Reads	Total Singleton Reads	Discarded	Percent Discarded	Retained	Percent Retained
Native_a	26,589,259	53,178,518	230,644	0.43	52,947,874	99.57
Native_b	23,095,438	46,190,876	180,708	0.39	46,010,168	99.61
Native_c	23,984,488	47,968,976	178,553	0.37	47,790,423	99.63
NonNative_a	62,244,591	124,489,182	454,719	0.37	124,034,463	99.63
NonNative_b	23,930,253	47,860,506	179,496	0.38	47,681,010	99.62
NonNative_c	22,740,315	45,480,630	156,828	0.34	45,323,802	99.66