Table 3.
Missense single nucleotide polymorphisms (SNPs) associated with asparagus anosmia at genome wide significance (P<5×10-8)
| SNP | Gene | Possible impact | PolyPhen score | Reference allele | Alternate allele | Marginal odds ratio (95% CI) | Marginal P value |
|---|---|---|---|---|---|---|---|
| rs6658227 | OR2L3 | Probably damaging | 0.97 | T | C | 1.07 (1.05 to 1.09) | 2.94e-9 |
| rs28545014 | OR14C36 | Probably damaging | 1 | T | G | 0.93 (0.91 to 0.95) | 3.53e-12 |
| rs7555310 | OR2M7 | Probably damaging | 0.97 | A | G | 1.14 (1.12 to 1.16) | 2.62e-43 |
| rs7555424 | OR2M7 | Possibly damaging | 0.85 | A | G | 1.14 (1.12 to 1.16) | 2.50e-43 |