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. 2016 Dec 13;8:130. doi: 10.1186/s13073-016-0383-z

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© The Author(s) 2016

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Distribution of ASDP-associated variants called against the primary assembly. A significantly and substantially higher number of ASDP-associated variants are called against the primary assembly according to whether the region is inferred to be REF-HAP or ALT-HAP by the ASDPex algorithm. The data appear to fall into two well-separated clusters. The figure shows the counts of Ref/Alt ASDP-associated variants per megabase for seven selected regions for the 121 in-house genomes. * p<1×10⁻⁸; ** p<1×10⁻¹⁰ (Mann–Whitney test). ASDP alignable scaffold-discrepant position