Table 2.

Population-specific alternate loci

Alternate locus	FIN	LWK	CHB	PEL
chr4_KI270787v1_alt			$✓$	$✓$
chr5_GL383531v1_alt	$✓$
chr5_GL949742v1_alt			$✓$
chr6_GL383533v1_alt				$✓$*
chr6_KI270801v1_alt		$✓$	$✓$	$✓$*
chr9_GL383542v1_alt		$✓$
chr11_JH159136v1_alt		$✓$		$✓$*
chr13_KI270839v1_alt	$✓$		$✓$	$✓$*
chr14_KI270844v1_alt			$✓$	$✓$
chr15_GL383555v2_alt	$✓$*		$✓$	$✓$*
chr18_GL383570v1_alt			$✓$

Shown are all the alternate loci that were inferred to be present in at least 90% of the individuals of a population. Alternate loci present in all investigated individuals of the population are marked with an asterisk (*)

CHB Asian, Han Chinese in Beijing, China, FIN European, Finnish in Finland, LWK African, Luhya in Webuye, Kenya, PEL South Americans, Peruvians from Lima, Peru