Table 2.
Sequence analysis of the bands indicated in Fig 1a (numerical ID) and 2a (capital letters ID).
| Band ID | % Blast similarity | Nearest species | Accession number | Presence in profiles of healthy controls (%) | Presence in profiles of CF patients (%) |
|---|---|---|---|---|---|
| 1 | 100 | Bifidobacterium adolescentis | KP256215.1 | 62.5 | 23.3 |
| 2 | 100 | Faecalibacterium prausnitzii | AJ270469 | 100 | 60 |
| 3 | 99 | Collinsella aerofaciens | NR113316.1 | 100 | 30 |
| 4 | 100 | Bifidobacterium catenulatum | KP256217.1 | 50 | 26.7 |
| 100 | Bifidobacterium pseudocatenulatum | AP012330.1 | |||
| 5 | 100 | Bifidobacterium adolescentis | KP256215.1 | 87.5 | 30 |
| 6 | 100 | Collinsella aerofaciens | NR113316.1 | 75 | 33.3 |
| 7 | 99 | Eubacterium rectale | AY804151 | 87.5 | 53.3 |
| 8 | 100 | Collinsella aerofaciens | NR113316.1 | 50 | 33.3 |
| 9 | 100 | Bifidobacterium coccoides | NR104700.1 | 100 | 63.3 |
| 100 | Blautia luti | NR041960.1 | |||
| 10 | 99 | Escherichia coli | LN867523.1 | 50 | 90 |
| 9 | Shigella flexneri | NR026331.1 | |||
| 99 | Escherichia fergusonii | NE074902.1 | |||
| 11 | 99 | Dorea invisus | NR113355.1 | 75 | 50 |
| A | 100 | Eubacterium rectale | NR 074634.1 | 100 | 66.7 |
| B | 95 | Uncultured Roseburia | JX 230356.1 | 87.5 | 16.7 |
| C | 99 | Blautia glucerasea | NR 113231.1 | 100 | 73.3 |
| D | 97 | Ruminococcus gnavus | AB 910745.1 | 100 | 62.5 |
| E | 98 | Blautia luti | NR 041960.1 | 88 | 33.0 |
| F | 99 | Dorea longicatena | NR 028883.1 | 100 | 44.3 |