Table 3. Generic correlating gene expressions with robustness towards heat stress (A) or oxidative stress (B).
A | ||||||||
locustag IL1403 | locustag SK11 | locustag KF147 | locustag MG1363 | gene | function | correlation | average P-value | maximum P-value |
L191486 | LACR_1356 | LLKF_1201 | llmg_1317 | yljB/nanE | N-acetylmannosamine-6-phosphate 2-epimerase | positive | 0.025 | 0.039 |
L101688 | LACR_1561 | LLKF_1575 | llmg_1029 | ypaA | hypothetical protein | negative | 0.026 | 0.062 |
L195318 | LACR_1054 | LLKF_0997 | llmg_1551 | yjjF/fdhC | formate/nitrite transporter | negative | 0.031 | 0.059 |
L89001 | LACR_1179 | LLKF_1106 | llmg_1494 | ykiI | ABC transporter permease | positive | 0.035 | 0.095 |
L64373 | LACR_0052 | LLKF_0039 | llmg_0075 | lplL | lipoate-protein ligase | positive | 0.044 | 0.116 |
L143312 | LACR_0389 | LLKF_0398 | llmg_0362 | dppA/optS | oligopeptide ABC transporter substrate binding protein | negative | 0.046 | 0.138 |
L72684 | LACR_1157 | LLKF_1090 | llmg_1513 | ykhE | arsenate reductase | negative | 0.048 | 0.103 |
L18206 | LACR_1946 | LLKF_1947 | llmg_1957 | ysdB | sodium ABC transporter ATP-binding protein | negative | 0.053 | 0.106 |
L192240 | LACR_0194 | LLKF_0183 | llmg_0200 | feoA | ferrous iron transport protein A | positive | 0.054 | 0.113 |
L148945 | LACR_1868 | LLKF_1872 | llmg_0725 | yrgF | hypothetical protein | negative | 0.057 | 0.184 |
B | ||||||||
locustag IL1403 | locustag SK11 | locustag KF147 | locustag MG1363 | gene | function | correlation | average P-value | maximum P-value |
L0223 | LACR_0665 | LLKF_0631 | llmg_0614 | ctsR | class III stress genes transcriptional repressor | negative | 0.025 | 0.055 |
L128386 | LACR_0373 | LLKF_0384 | llmg_0348 | fhuG | ferrichrome ABC transporter permease FhuG | positive | 0.030 | 0.051 |
L100027 | LACR_2040 | LLKF_2041 | llmg_2036 | ytbC | hypothetical protein | negative | 0.039 | 0.127 |
L0046 | LACR_0642 | LLKF_0600 | llmg_0586 | gnd | 6-phosphogluconate dehydrogenase | negative | 0.044 | 0.115 |
L127476 | LACR_0372 | LLKF_0383 | llmg_0347 | fhuB | ferrichrome ABC transporter permease protein | positive | 0.059 | 0.109 |
L117074 | LACR_2341 | LLKF_2294 | llmg_2327 | yvdD | glycerol uptake facilitator protein | negative | 0.066 | 0.134 |
L103246 | LACR_1565 | LLKF_1577 | llmg_1026 | ypaC | methylase for ubiquinone/menaquinone biosynthesis | negative | 0.077 | 0.102 |
L104745 | LACR_1567 | LLKF_1579 | llmg_1024 | ypaE | hypothetical protein | negative | 0.081 | 0.118 |
L162870 | LACR_1609 | LLKF_1641 | llmg_0989 | ypgD | ABC transporter ATP binding and permease protein | positive | 0.098 | 0.183 |
L129403 | LACR_0374 | LLKF_0385 | llmg_0349 | fhuD | ferrichrome ABC transporter substrate binding protein | positive | 0.099 | 0.157 |
Top 10 highest correlating transcript levels with robustness towards heat stress (A) or oxidative stress (B). Average P-value is the average of the P-values of the correlation as assessed by a linear model of the strains MG1363, IL1403, KF147 and SK11 and was used to rank the genes. Maximum P-value indicates the largest P-value of the correlation among the four strains.