Table 2.
A summary of the sequencing reads alignment to the Sus scrofa genome.
| Sample | Landrace 1 | Landrace 2 | Landrace 3 | DPL 1 | DPL 2 | DPL 3 |
|---|---|---|---|---|---|---|
| Total reads | 48,632,150 | 39,206,506 | 42,966,768 | 32,416,978 | 44,590,578 | 43,659,992 |
| Total base pairs | 6,127,650,900 | 4,940,019,756 | 5,413,812,768 | 4,084,539,228 | 5,618,412,828 | 5,501,158,992 |
| Mapped reads | 39,582,267 81.39% | 30,911,049 78.84% | 33,909,206 78.92% | 23,998,577 74.03% | 35,345,365 79.27% | 34,459,642 78.93% |
| Uniq mapped reads | 38,400,961 78.96% | 30,054,581 76.66% | 32,696,054 76.10% | 22,607,515 69.74% | 33,916,617 76.06% | 33,195,934 76.03% |
| %≥Q30 | 90.01 | 89.39 | 89.52 | 90.39 | 89.58 | 89.62 |
| GC content % | 58.36 | 58.84 | 58.07 | 55.94 | 57.91 | 58.14 |