Table 1. Average fraction of informative edges in the biological networks among the left-out genes before and after edge filtering.
| DRYGIN | SMD | YeastNet | BioGRID | ||
|---|---|---|---|---|---|
| BP | Before filtering | 11.75% | 19.20% | 40.44% | 40.39% |
| After filtering | 47.79% | 70.43% | 67.84% | 53.41% | |
| CC | Before filtering | 3.47% | 7.17% | 21.43% | 26.75% |
| After filtering | 41.38% | 73.46% | 59.62% | 58.00% | |
| MF | Before filtering | 3.73% | 5.46% | 16.05% | 13.42% |
| After filtering | 15.66% | 74.70% | 57.23% | 32.90% |
These values were obtained by averaging over all the training parts of each sub-ontology.