Table 1.
The list of 17 SNPs found in the coding region of DXS1 and DXS2, 1-deoxy-D-xylulose-5-phosphate synthase; LBC, lycopene β-cyclase; BCH1, β-carotene hydroxylase; ZISO2, zeta carotene isomerase; DXR2, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; and GGPPS2, geranyl-geranyl diphosphate synthase with their chromosomal location, physical position (bp) and the differences between the reference (CDC Frontier) and the alternative across four other cultivars.
| Gene | Chromosome | Position (bp) | Reference | Alternative | CDC 441-34 | CDC Jade | CDC Cory | CDC Verano |
|---|---|---|---|---|---|---|---|---|
| DXS2 | Ca1 | 4631533 | G | A | 1/1 | 1/1 | 1/1 | 1/1 |
| LBC | Ca3 | 28752373 | A | G | 1/1 | 1/1 | 1/1 | 1/1 |
| BCH1 | Ca4 | 12093051 | T | C | 0/0 | 1/1 | 0/1 | 0/1 |
| ZISO2 | Ca6 | 10805615 | C | T | 0/0 | 0/0 | 0/0 | 0/1 |
| ZISO2 | Ca6 | 10805725 | T | G | 0/0 | 0/0 | 0/0 | 0/1 |
| ZISO2 | Ca6 | 10805905 | C | A | 0/0 | 0/0 | 0/0 | 0/1 |
| ZISO2 | Ca6 | 10805923 | C | T | 0/0 | 0/0 | 0/0 | 0/1 |
| DXS1 | Ca7 | 5529110 | A | G | 0/0 | 1/1 | 1/1 | 0/1 |
| DXS1 | Ca7 | 5529191 | A | G | 0/0 | 1/1 | 1/1 | 0/0 |
| DXR2 | Ca7 | 30117254 | T | C | 1/1 | 1/1 | 0/0 | 1/1 |
| DXR2 | Ca7 | 30117353 | A | G | 1/1 | 1/1 | 0/1 | 1/1 |
| DXR2 | Ca7 | 30117362 | A | G | 1/1 | 1/1 | 0/1 | 1/1 |
| DXR2 | Ca7 | 30117491 | C | T | 1/1 | 1/1 | 0/1 | 1/1 |
| DXR2 | Ca7 | 30117821 | T | C | 1/1 | 1/1 | 0/1 | 1/1 |
| DXR2 | Ca7 | 30136051 | A | G | 1/1 | 1/1 | 0/0 | 1/1 |
| DXR2 | Ca7 | 30136328 | G | A | 1/1 | 1/1 | 0/1 | 1/1 |
| GGPPS2 | Ca8 | 4790033 | C | T | 0/0 | 0/1 | 0/0 | 0/1 |