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. 2016 Dec 15;7:1867. doi: 10.3389/fpls.2016.01867

Table 1.

The list of 17 SNPs found in the coding region of DXS1 and DXS2, 1-deoxy-D-xylulose-5-phosphate synthase; LBC, lycopene β-cyclase; BCH1, β-carotene hydroxylase; ZISO2, zeta carotene isomerase; DXR2, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; and GGPPS2, geranyl-geranyl diphosphate synthase with their chromosomal location, physical position (bp) and the differences between the reference (CDC Frontier) and the alternative across four other cultivars.

Gene Chromosome Position (bp) Reference Alternative CDC 441-34 CDC Jade CDC Cory CDC Verano
DXS2 Ca1 4631533 G A 1/1 1/1 1/1 1/1
LBC Ca3 28752373 A G 1/1 1/1 1/1 1/1
BCH1 Ca4 12093051 T C 0/0 1/1 0/1 0/1
ZISO2 Ca6 10805615 C T 0/0 0/0 0/0 0/1
ZISO2 Ca6 10805725 T G 0/0 0/0 0/0 0/1
ZISO2 Ca6 10805905 C A 0/0 0/0 0/0 0/1
ZISO2 Ca6 10805923 C T 0/0 0/0 0/0 0/1
DXS1 Ca7 5529110 A G 0/0 1/1 1/1 0/1
DXS1 Ca7 5529191 A G 0/0 1/1 1/1 0/0
DXR2 Ca7 30117254 T C 1/1 1/1 0/0 1/1
DXR2 Ca7 30117353 A G 1/1 1/1 0/1 1/1
DXR2 Ca7 30117362 A G 1/1 1/1 0/1 1/1
DXR2 Ca7 30117491 C T 1/1 1/1 0/1 1/1
DXR2 Ca7 30117821 T C 1/1 1/1 0/1 1/1
DXR2 Ca7 30136051 A G 1/1 1/1 0/0 1/1
DXR2 Ca7 30136328 G A 1/1 1/1 0/1 1/1
GGPPS2 Ca8 4790033 C T 0/0 0/1 0/0 0/1