Table 2. Comparison of de novo assembly data using Oases, Trinity and CLC Genomics Workbench.
Oases | Trinity | CLC Genomics Workbench | |
---|---|---|---|
Number of transcripts | 38,783 | 31,363 | 26,294 |
Average transcript length (bp) | 1172 | 865 | 632 |
Total transcript length (bp) | 45,471,333 | 27,056,569 | 16,624,957 |
Annotated transcripts | 26,672 (68.8%) | 17,452 (55.6%) | 11,807 (44.9%) |