Table 2.

Total eubacterial community composition in 0.6-TCM soil on the basis of a 16S rRNA gene clone library analysis.

Phylum	Class	Order	Family	Genus	Clone librarya	Best RDP hitb	% IDc
Acidobacteria	Acidobacteria	unspecified	unspecified	Gp3	3%	JQ712939	96
				Gp4	2%	AY094624	99
				Gp6	6%	HQ597776	99
				Gp10	6%	JQ408035	98
Actinobacteria	Actinobacteria	Acidimicrobiales	Acidimicrobineae	Aciditerrimonas	7%	LN573416	99
		Actinomycetales	Intrasporangiaceae	Phycicoccus	8%	HQ132449	99
			Micrococcaceae	Arthrobacter	5%	KF923442	99
			Streptosporangiaceae	Microbispora	1%	KF886293	96
		Gaiellales	Gaiellaceae	Gaiella	2%	KC554071	99
		unclassified	unclassified	unclassified	1%	FJ478842	99
Armatimonadetes	Chthonomonadetes	Chthonomonadales	Chthonomonadaceae	Chthonomonas	2%	GU454980	95
Bacteroidetes	Sphingobacteria	Sphingobacteriales	Chitinophagaceae	unclassified	5%	GQ487995	99
Chloroflexi	Thermomicrobia	Sphaerobacterales	Sphaerobacteraceae	Sphaerobacter	3%	KC432559	95
Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	16%	EU221338	99
Proteobacteria	Alphaproteobacteria	Rhodospirillales	Rhodospirillaceae	Dongia	3%	FJ478641	97
				Skermanella	1%	KF010774	99
		Sphingomonadales	Sphingomonadaceae	Sphingomonas	6%	JN178270	99
	Betaproteobacteria	Burkholderiales	Alcaligenaceae	Derxia	1%	GQ009540	99
			Comamonadaceae	unclassified	2%	EF516785	99
		Methylophilales	Methylophilaceae	Methylobacillus	2%	FJ444763	99
	Gammaproteobacteria	Methylococcales	Methylococcaceae	Methylobacter	7%	AY921679	98
				Methylocaldum	3%	HM362553	94
unclassified	Unclassified	unclassified	unclassified	unclassified	4%	JQ088371	87

^aThe amount of clones representing each bacterial phylotype within the clone library out of 100 screened clones.

^bThe best hit resulting from a comparison of each 16S rRNA gene partial sequence with sequences in the small-subunit rRNA database of the Ribosomal Database Project (RDP).

^cThe % of nucleotide identity revealed by a BLAST analysis of the RDP best hit.