. 2016 Oct 28;31(4):418–426. doi: 10.1264/jsme2.ME15195

Table 4.

Putative suberin degradation and utilization pathways in Rhodanobacter thiooxydans and Myxococcus xanthus

Biological process	Predicted protein function	Uniprot accession number of identified proteins

		R. thiooxydans	M. xanthus
Suberin depolymerization
Suberin adhesion	lipid-binding protein	I4WDW1	Q1D009
Depolymerization of the suberin fatty acid polyester structure	lipase	I4WSC3, I4WGM2, I4WUC2^a	Q1CWS1, Q1D4F3, Q1D5W1 ^b
	feruloyl esterase		Q1D548
Fatty acid utilization
Lipid cell entry	lipid transport	I4WU70	Q1D3Z8 ^b, Q1D5Z6 ^b, Q1DDZ2 ^b
Lipid cell entry	long-chain fatty acid transport	I4WHD4	Q1CWS0
Fatty acid catabolism
CoA activation	fatty acyl CoA synthetase	I4WFP4
	long-chain fatty acyl CoA ligase	I4WB55^a	Q1D9B8 ^b, Q1D855 ^b
	medium-chain fatty acyl CoA ligase		Q1CYM5 ^b
β-oxidation	acyl-CoA dehydrogenase	I4WP46, I4WSG8, I4WDA0, I4WKP8^a, I4WM94^a, I4WM95^a, I4WPU1^a, I4WM78^a, M4NHA9^a, I4W091^b	Q1D3D6, Q1D4E4 ^b, Q1D5Y1 ^b, Q1CZW5, A0A0H4WWQ8
	enoyl-CoA hydratase	I4WR77^b, I4WPL0	Q1D5U2 ^b
	3-hydroxyacyl-CoA dehydrogenase	I4WIC4, I4VRU7^a	Q1D5U1 ^b, Q1D233 ^b
	acetyl-CoA acetyltransferase	I4WBZ6, I4WIC3	Q1D5VO, Q1D234 ^b, BKT^b, Q1D003 ^a
Regulation of the fatty acid utilization process	fatty acid-binding protein	I4WE25
Regulation of the fatty acid utilization process	acyl CoA hydrolase		Q1D964 ^b

Proteins detected only on day 30 (R. thiooxydans) or day 25 (M. xanthus).

Proteins detected only on day 5.