Table 2.
oligos to assay protection at the 5S nucleosome
| Oligo name | sequence | pair position (center of the product relative to HO cut site in bp) |
|---|---|---|
| Z1Np4 Z1Np3-RC |
CGCAACAGTATAATTTTATAAACCC CTTCAGCATAATTATTCGTCAACC |
28bp |
| Z1Np3 Z1Np2-RC |
GGTTGACGAATAATTATGCTGAAG CAGTACTCGAAAGATAAACAACC |
95bp |
| Z1Np5 Z1Np6-RC |
GAAGATGTGTTTGTACATTTGGCC GGGGAGTTTCAAATAGGATAGC |
142bp |
| Z1Np2 Z1Np1-RC |
GGTTGTTTATCTTTCGAGTACTG GAGTGTATAAACAAACATTGGGAAC |
178bp |
| Z1Np6 Z2Np2-RC |
GCTATCCTATTTGAAACTCCCC CAAAAGAGGCAAGTAGATAAGGG |
221bp |
| Z1Np1 Z2Np1-RC |
GTTCCCAATGTTTGTTTATACACTC GCTTGAGTCTGAGTAATATCATATTTTATAC |
256bp |
| Z2Np2 5Sp10-RC |
CCCTTATCTACTTGCCTCTTTTG CCCTGGAAGTTATTCGTTGC |
299bp |
| Z2Np1 5Sp2-RC |
GTATAAAATATGATATTACTCAGACTCAAGC GGGTCAGGGATGTTATGACGTC |
329bp |
| 5Sp10 5Sp11-RC |
GCAACGAATAACTTCCAGGG GTAGGCTCTTGCTTGATGAAAG |
379bp |
| 5sp14 5sp15-RC |
GGGATTTATAAGCCGATG ATATTCAGCATGGTATGGTCG |
396bp |
| 5Sp2 5Sp1 |
GACGTCATAACATCCCTGACCC GTGATCGGACGAGAACCGG |
407bp |
| 5sp16 5sp17-RC |
CCCTTTAAATAGCTTAACTTTC CTATGCTGCTTGACTTCGG |
433bp |
| 5Sp11 5Sp12-RC |
CTTTCATCAAGCAAGAGCCTAC CCAAGTACTAACCGAGCCC |
451bp |
| 5sp15 5sp18-RC |
CCATACCATGCTGAATATACC CCAGGCGGTCTCCCATCC |
471bp |
| 5Sp1-RC 5Sp3 |
CCGGTTCTCGTCCGATCAC GAATTCCCGAGGAATTCGGTATTC |
485bp |
| 5sp17 5sp19-RC |
CGAAGTCAAGCAGCATAGG GATCCAAATAGGCAATGGG |
511bp |
| 5Sp12 5Sp13-RC |
GGGCTCGGTTAGTACTTGG GGCCGCACTAGTGATCC |
525bp |
| 5sp18 5sp20-RC |
GGATGGGAGACCGCCTGG CTCCCATATGGTCGACCTG |
546bp |
| 5Sp3-RC 5Sp4 |
GAATACCGAATTCCTCGGGAATTC CTATAGGGCGAATTGGAGC |
565bp |
| 5Sp13 5Sp5 |
GGATCACTAGTGCGGCC CAAGGCGATTAAGTTGGG |
625bp |
| 5Sp4-RC 5Sp5 |
GCTCCAATTCGCCCTATAG CAAGGCGATTAAGTTGGG |
638bp |
| 5Sp5-RC 5Sp6 |
CCCAACTTAATCGCCTTG CATTCAGGCTGCGCAACTG |
722bp |
| R3p3 5Sp10-RC |
GTAGTTCATAAATAAACGTATGAGATC CCCTGGAAGTTATTCGTTGC |
0 bp (HO cut site) |
| Pho5orf+50 Pho5orf+100 |
CGCTTCTTTGGCCAATGC GGGTACCAATCTTGTCGAC |