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. 2016 Sep 6;44(22):10571–10587. doi: 10.1093/nar/gkw782

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© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — Enrichment for SINEs (AluJ and AluS) in H3K4me1 peaks. (A) GAT simulation showing 1.4-fold more AluJ and AluS in H3K4me1 regions with P-value of 0.0001. (B) Genomic distribution of the H3K4me1 peaks containing Alu repeats present in infected but not uninfected cells (VnotN). (C) Gene ontology analysis on genes associated with VnotN peaks that contain a TE. (D) Scatter Plot of the Homer Analysis showing that the analysis including transposable elements (TEs) (y-axis) highlighted new TF (blue) not present in the mask analysis only (red) (x-axis), TF present in both analysis are represented in purple.