Table 2. Association status of SLC44A4 SNPs with UC in north Indian, Japanese and Dutch populations.

			North Indian				Japanese				Dutch
			MAF		P-value	OR (95% CI)	MAF		P-value	OR (95% CI)	MAF		P-value	OR (95% CI)
SNP	Positiona (Build hg19/GRCh38.p2)	Regionb	Cases	Controls			Cases	Controls			Cases	Controls
rs9461727 C>A	Chr6:g.31863944	Intron 20	0.01	0.02	0.13	0.66 (0.38–1.14)	0.003	0.005	0.22	0.53 (0.19–1.5)	0.002	0.002	0.94	1.04 (0.36–3)
rs6915800 G>A Arg493Cys	Chr6:g.31865883	Exon 14	Monomorphic				0	0.002	0.08	0	Monomorphic
rs4947332 G>A	Chr6:g.31866420	Intron 13	0.02	0.05	2.31 × 10−5	0.46 (0.32–0.66)	0.01	0.02	0.03	0.55 (0.31–0.95)	0.03	0.03	0.45	0.89 (0.67–1.2)
rs693906 G>C	Chr6:g.31867387	Intron 13	0.08	0.1	0.22	0.87 (0.69–1.09)	0.06	0.07	0.13	0.83 (0.65–1.06)	0.14	0.16	0.006	0.82 (0.71–0.94)
rs11965547 G>A	Chr6:g.31868374	Intron 13	0.13	0.13	0.45	0.93 (0.76–1.13)	0.22	0.26	0.005	0.82 (0.72–0.94)	0.11	0.12	0.22	0.91 (0.77–1.06)
rs521977 C>A	Chr6:g.31869050	Intron 13	0.1	0.11	0.35	0.91 (0.73–1.12)	0.07	0.09	0.03	0.79 (0.64–0.96)	0.28	0.32	0.0002	0.81 (0.73–0.91)
rs660594 A>G	Chr6:g.31869473	Intron 12	0.31	0.35	0.04	0.86 (0.75–0.99)	NOT CALLED				0.44	0.49	0.0002	0.83 (0.75–0.91)
rs577272 A>G	Chr6:g.31870186	Intron 11	0.33	0.38	0.007	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.78 (0.69–0.89)	0.44	0.49	0.0004	0.83 (0.75–0.92)
rs644827 G>A Val326Met	Chr6:g.31870664	Exon 11	0.33	0.38	0.008	0.83 (0.72–0.95f	0.31	0.36	0.0001	0.78 (0.69–0.89)	0.44	0.49	0.0004	0.83 (0.75–0.92)
rs644774 A>G	Chr6:g.31870713	Intron 10	0.33	0.38	0.008	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.79 (0.7–0.89)	0.44	0.49	0.0004	0.83 (0.75–0.92)
rs494620 G>A Tyr271Tyr	Chr6:g.31870936	Exon 10	0.48	0.41	1.25 × 10−5	1.34 (1.18–1.53)	0.36	0.43	2.68 × 10−6	0.75 (0.67–0.85)	0.41	0.37	0.002	1.18 (1.06–1.31)
rs2242665 A>G Ile187Val	Chr6:g.31871532	Exon 8	0.33	0.38	0.008	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.79 (0.69–0.89)	0.44	0.49	0.0004	0.83 (0.75–0.92)
rs2242664 A>G Gly179Gly	Chr6:g.31871554	Exon 8	0.33	0.38	0.008	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.79 (0.69–0.89)	0.44	0.49	0.0004	0.83 (0.75–0.92)
rs3132442 A>G	Chr6:g.31871717	Intron 7	0.34	0.38	0.007	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.79 (0.69–0.89)	0.46	0.51	0.0002	0.83 (0.75–0.91)
rs3130481 C>G	Chr6:g.31871979	Intron 7	0.34	0.38	0.007	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.78 (0.69–0.89)	0.46	0.51	0.0002	0.83 (0.75–0.91)
rs3130482 A>C	Chr6:g.31872005	Intron 7	0.34	0.38	0.007	0.83 (0.72–0.95)	0.31	0.36	0.0001	0.78 (0.69–0.89)	0.46	0.51	0.0002	0.83 (0.75–0.91)
rs614549 A>G	Chr6:g.31872848	Intron 7	0.44	0.37	1.32 × 10−5	1.35 (1.18–1.54)	0.42	0.49	1.4 × 10−7	0.73 (0.65–0.82)	0.36	0.32	0.002	1.18 (1.06–1.31)
rs12661281 A>T Asp123Val	Chr6:g.31874821	Exon 6	0.12	0.08	0.0002	1.52 (1.22–1.9)	0.1	0.13	7.8 × 10−5	0.68 (0.57–0.83)	0.16	0.14	0.03	1.18 (1.02–1.36)
rs2736428 G>A (NI GWAS INDEX SNP)	Chr6:g.31876147	Intron 2	0.39	0.29	4.94 × 10−10	1.56 (1.35–1.79)	0.42	0.51	3.37 × 10−9	0.71 (0.63–0.79)	0.33	0.29	0.002	1.19 (1.07–1.33)
rs6907185 A>G	Chr6:g.31876907	Intron 2	Failed HWE				0.002	0.006	0.05	0.33 (0.1–1.07)	0.07	0.07	0.36	1.1 (0.9–1.34)
rs9267658 G>A	Chr6:g.31878208	Intron 1	0.04	0.04	0.67	0.93 (0.67–1.29)	MAF<0.001				0.13	0.16	0.01	0.83 (0.72–0.96)
rs9267659 G>A	Chr6:g.31878457	Intron 1	0.11	0.12	0.48	0.93 (0.76–1.14)	0.07	0.09	0.03	0.79 (0.64–0.98]	0.21	0.22	0.36	0.94 (0.83–1.07]

^aExample of description of variants – rs9461727: human genome reference sequence hg19 chr6:g.31863944 C>A.

^bExons are numbered according to NG_023058.1.