Table 1. Genome-wide variations among 129 chickpea genotypes.
| SNPs |
Indels |
CNVs | PAVs | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Intra-genic |
Intergenic | Total | Intra-genic |
Intergenic | Total | |||||
| Exon | Intron | Exon | Intron | |||||||
| All 129 genotypes | 46,387 | 115,360 | 1,217,043 | 1,378,790 | 1,229 | 17,222 | 132,989 | 151,440 | 3,822 | 24,603 |
| Market type (129 genotypes) | 46,387 | 115,360 | 1,217,043 | 1,378,790 | 1,229 | 17,222 | 132,989 | 151,440 | 3,822 | 24,603 |
| Desi (88 genotypes) | 44,859 | 110,908 | 1,167,349 | 1,323,116 | 1,154 | 16,399 | 126,493 | 144,046 | 2,954 | 23,160 |
| Kabuli (41 genotypes) | 38,964 | 94,971 | 1,016,430 | 1,150,365 | 808 | 11,482 | 90,746 | 103,036 | 3,273 | 21,706 |
| Year wise (124 genotypes) | 46,309 | 115,007 | 1,212,774 | 1,374,090 | 1,211 | 17,107 | 131,928 | 150,246 | 3,811 | 24,249 |
| Before 1993 (38 genotypes) | 39,789 | 97,459 | 1,035,388 | 1,172,636 | 984 | 14,476 | 108,089 | 123,549 | 2,315 | 20,734 |
| 1993-2002 (40 genotypes) | 40,380 | 99,195 | 1,055,415 | 1,194,990 | 810 | 11,412 | 91,292 | 103,514 | 2,318 | 21,150 |
| 2003-2012 (46 genotypes) | 42,210 | 104,952 | 1,095,817 | 1,242,979 | 861 | 12,386 | 99,123 | 112,370 | 3,511 | 22,045 |
CNVs = Copy number variations; PAVs = Presence absence variations.