Table 2. Estimates of the genome size of P. lambertiana based on the distribution of k-mers in the paired read data.
k = 24 | k = 31 | |
---|---|---|
Total k-mers | 1.56 × 1012 | 1.47 × 1012 |
Erroneous k-mers | 1.20 × 1010 | 2.20 × 1010 |
Total correct k-mers | 1.55 × 1012 | 1.45 × 1012 |
E(unique k-mer depth) mode | 49.72 | 46.77 |
Estimated genome size | 31.1 Gbp | 30.9 Gbp |
E(unique k-mer depth) mean | 48.53 | 46.02 |
Estimated genome size | 31.9 Gbp | 31.4 Gbp |
Erroneous k-mers refer to k-mers that were identified as likely to contain errors, and these were removed from the calculation.