Table I.
Level | Description and unique feature | Website |
---|---|---|
Glycan entries | GlyTouCan | glytoucan.org |
UnicarbKB | unicarbkb.org | |
| ||
Enzyme data | CAZY (Carbohydrate-Active Enzyme) | www.cazy.org |
IUBMB ExploreEnz database | enzyme-database.org | |
BRENDA (Comoprehensive enzyme info. system) | brenda-enzymes.org | |
| ||
Transcript | Glycogene microarray data - for human/mouse samples (CFG) | www.functionalglycomics.org |
Gene Expression Omnibus (GEO)- functional genomics repository | www.ncbi.nlm.nih.gov/geo | |
| ||
Glycomics/Glycoproteomics | GlycoBase | glycobase.nibrt.ie |
UniCarb-KB | www.unicarbkb.org | |
CFG MALDI-TOF/TOF datasets | www.functionalglycomics.org | |
| ||
Glycan binding data | CFG glycan array entries | www.functionalglycomics.org |
LfDB (Lectin Frontier Database) & GlycoEpitope | jcggdb.jp/index_en.html | |
| ||
Pathway | KEGG GLYCAN | www.genome.jp/kegg/glycan |
This table only lists relational databases that would be useful for computational modeling of cellular glycosylation biosynthetic pathways. For a more comprehensive list of all glycan-related databases, please see ref. [9].