Extended Data Table 3. Crystallographic data collection and refinement statistics.
Crystallographic data collection and refinement statistics for LBD structures.
DATA COLLECTION | (2S,4R)-4-MethylGlu | LY466195 - Glu |
Space group | P61 | P6122 |
Unit cell a, b, c (Å) | 52.3, 52.3, 170.9 | 102.8, 102.8, 282.0 |
a, β, g | 90, 90, 120 | 90, 90, 120 |
Number per a.u. | 1 | 2 |
Wavelength (Å) | 1.0000 | 1.0000 |
Resolution (Å) a | 30 – 1.27 (1.29) | 30 – 1.8 (1.83) |
Unique observations | 68757 | 82330 |
Mean redundancy b | 7.0 (4.7) | 14.5 (14.2) |
Completeness (%) b | 99.4 (95.2) | 100 (100) |
Rmergebc | 0.043 (0.335) | 0.058 (> 1) |
Rpimbd | 0.017 (0.166) | 0.017 (0.326) |
I/s(I)b | 45.6 (3.8) | 48.4 (2.8) |
REFINEMENT | ||
Resolution (Å) | 27.29 – 1.27 | 29.86 – 1.80 |
Protein atoms (AC) e | 2127 (80) | 4125 (95) |
Ligand atoms | 11 | 34 |
Li/Cl/SO4 ions | -/-/- | 2/10/2 |
Water atoms | 410 | 533 |
Rwork/Rfree (%) f | 14.3/16.3 | 16.4/18.7 |
rms deviations | ||
Bond lengths (Å) | 0.009 | 0.014 |
Bond angles ° | 1.24 | 1.40 |
Mean B-Values (Å2) | ||
Protein overall | 20.9 | 27.5 |
MC/SC g | 18.6/23.2 | 23.4/31.7 |
Ligand | 13.2 | 19.8 |
Li/Cl/SO4 ions | -/-/- | 23.8/57.1/34.8 |
Water | 34.9 | 34.1 |
Ramachandran % h | 97.8/0 | 97.9/0 |
Superscripts a–h denote the following:
Values in parenthesis indicate the low resolution limit for the highest-resolution shell of data.
Values in parenthesis indicate statistics for the highest-resolution shell of data.
Rmerge = (Σ|II − <II>|)/ΣI |II|, where <II> is the mean II over symmetry–equivalent reflections.
, where <II> is the mean II over symmetry–equivalent reflections.
Alternate conformations.
Rwork = (Σ ||Fo| − |Fc||)/Σ |Fo|, where Fo and Fc denote observed and calculated structure factors, respectively; 5% of the reflections were set aside for the calculation of the Rfree value.
Main chain/Side chain.
Preferred/Disallowed conformations.