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. 2016 Dec 15;4:e2786. doi: 10.7717/peerj.2786

Table 1. Statistics and assembled result of SOAP denovo2 and Trinity.

Species Assembly method Total number of contigs Total number of length N50 Max contig length
Quasipaa boulengeri K50a 6,341,679 1,860,878,175 300 2,615
K55a 6,086,855 1,875,157,178 314 2,880
K60a 5,715,340 1,870,183,020 332 3,183
K65a 5,460,129 1,843,817,246 338 2,817
K70a 5,122,048 1,779,429,007 332 2,980
K75a 4,926,588 1,723,696,265 318 2,779
K80a 4,686,214 1,630,358,728 300 2,830
Trinity 1,555,983 755,862,296 526 16,672
Amolops chunganensis K50a 5,072,290 1,417,075,271 300 2,537
K55a 4,955,300 1,436,818,547 300 2,741
K60a 4,746,605 1,436,171,325 300 2,416
K65a 4,549,311 1,407,207,578 300 2,513
K70a 4,301,826 1,350,614,260 300 2,527
K75a 4,167,451 1,308,301,284 300 2,578
K80a 4,007,361 1,244,363,080 300 4,366
Trinity 1,017,500 448,075,968 469 16,795

Notes.

a

The k-mer sizes used in SOAP denovo2.