TABLE 3.
SSP analysis in gag region
| Subtype | Equivalent HXB2 gag position of SSPa |
|---|---|
| B | 91T, 100A, 136G, 150G, 173G, 264G, 321G, 645G, 838A, 839C, 1019C, 1153A, 1379A |
| C | 58A, 82C, 84C, 89T, 99C, 237C, 283C, 284G, 501G, 624G, 1074C, 1417G, 1497T |
| CRF01-AE | 117A, 121T, 258G, 261C, 488G, 792G, 964C, 966A, 1383A, 1385A |
| CRF07-BC | 58A, 82C, 84C, 89T, 99C, 237C, 283C, 284G, 332T, 838A, 839C, 1129C, 1293C, 1379A |
| CRF08-BC | 58A, 82C, 84C, 89T, 99C, 237C, 283C, 284G, 332T, 645G, 838A, 839C, 1074C, 1129C, 1293G, 1497T |
a
SSP positions used to design subtype-specific primers are underlined.