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. 2004 Aug 23;101(35):12854–12859. doi: 10.1073/pnas.0405188101

Table 1. Heme deviations from planarity.

rms deviation* Saddling Ruffling
H-NOX
Orthorhombic
    Heme A 0.45 -1.092 -1.094
    Heme B 0.44 -0.994 -1.210
Monoclinic
    Heme A 0.46 -1.069 -1.105
    Heme B 0.33 -0.634 -0.814
Cytochrome c3 0.36 1.034 -0.429
Peroxidase 0.33 -0.905 -0.660
Nitrophorin 0.26 0.356 -0.843
Deoxy-FixL 0.26 0.597 -0.375
Oxy-FixL 0.19 0.438 -0.323
Oxy-Myoglobin 0.12 0.185 0.011

RCSB protein data bank codes: Cytochrome c3, 2CDV heme 1 (38); peroxidase, 1ARP (39); nitrophorin, 1ERX (40); deoxy-FixL, 1DRM (8); oxy-FixL, 1DP6 (5); oxy-myoglobin, 1A6M (41).

*

rms deviation from planarity angstroms.

Heme distortions calculated using normal-coordinate analysis (37). The numerical value shown is the displacement along the normal mode in angstroms.

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