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. 2016 Dec 16;91(1):e01931-16. doi: 10.1128/JVI.01931-16

TABLE 1.

Conservative nucleotides and base pairs at 3′-end positions 13 to 15 and 5′-end positions 14′ to 16′

Segment and/or subtype(s) 3′-end positions 13–15 5′-end positions 14′–16′ Base pairing at the indicated positionb
13-14′ 14-15′ 15-16′
PB2 AGU UCG ×
PB1 GUU CAU ×
PA AUG UAC
NP CAU GUA
M AUC UAC ×
NS CAC GUG
HA
    1–16 CCXa GUG × or ×
NA
    1, 2, 4, 5, 8 UCA AGU
    6, 7 CAC GUG
    3 ACG UGC
    9 CAG GUC
a

X represents either A or U at position 15 in the 3′ end that is variable among different HA subtype segments.

b

The presence (√) or absence (×) of base pairing is indicated.