. 2016 Dec 19;7:2019. doi: 10.3389/fmicb.2016.02019

Table 3.

Genotyping of MRSA isolates from turkeys and broilers.

Species	Sample	Clonal complex	spa-Type	Methicillin resistance and SCCmec typing
				mecA	delta_mecR	ugpQ	ccrA-1	ccrB-1	Q9XB68-dcs	xylR	ccrA-3	ccrB-3	ccrAA probe 1	ccrAA probe 2	ccrC	ccrA-4	ccrB-4
Turkey	Choana swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Choana swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t011	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-V	t034	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC389 MRSA-n.t.^#	n.t.^#	POS	POS	POS	NEG	NEG	AMB	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Turkey	Skin swab	CC5 MRSA-III	t002	POS	POS	POS	NEG	AMB	POS	NEG	POS	POS	NEG	NEG	NEG	NEG	NEG
Broiler	Choana swab	CC389 MRSA-n.t.^#	n.t.^#	POS	POS	POS	NEG	NEG	POS	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Choana swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Choana swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Choana swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Choana swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Choana swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	NEG	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Skin swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Skin swab	CC389 MRSA-V	t899	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG
Broiler	Skin swab	CC389 MRSA-V	t1430	POS	NEG	POS	NEG	AMB	NEG	NEG	NEG	NEG	POS	POS	POS	NEG	NEG

POS, Positive; NEG, Negative; AMB, Ambiguous. mecA, alternate penicillin binding protein 2, defining MRSA; delta_mecR, truncated signal transducer protein MecR1; ugpQ, glycerol-phosphoryl-diester-phospho-di-esterase, associated with mecA; ccrA-1; ccrB-1, cassette chromosome recombinase genes A/B-1; Q9XB68-dcs, hypothetical protein from SCCmec elements; Q9XB68-dcs; xylR, homolog of xylose repressor, associated with SCCmec-elements; ccrA-3; ccrB-3, cassette chromosome recombinase genes A/B-3; ccrAA (MRSAZH47)_probe 1; ccrAA (MRSAZH47)_probe 2; ccrC (85–2082), cassette chromosome recombinase genes “ccrAA” (hypothetical) and ccrC; ccrA-4; ccrB-4; cassette chromosome recombinase genes A/B-4.

not typed.