Table 5.
Case ID | CDR3 (amino acid) | CDR3 length (nt) | Brain (%) | TRBV gene | Blood (%) | TRBV gene |
---|---|---|---|---|---|---|
RECP32 | CASSQDEGDEQYF | 39 | 9.22 | 3 | 0 | n.a. |
CASSLNPDRGIYEQFF | 48 | 5.01 | 7 | 0 | n.a. | |
RECP33 | CAISESNYGYTF | 36 | 22.26 | 6,10 | 0.13 | 6,10 |
CASSLLVVESELHTGELFF | 57 | 13.47 | 4,5 | 0.004 | 5 | |
CASSDSRGNIQYF | 39 | 6.08 | 6 | 0 | n.a. | |
CASSKTSGPDNEQFF | 45 | 5.40 | 7,11 | 0.004 | 7 | |
RECP34 | CASAEEWSSYNSPLHF | 48 | 6.65 | 6,10 | 0 | n.a. |
CASTLLRDTDTQYF | 42 | 4.89 | 2 | 0.027 | 2 | |
CASSQDTPGQFYEQYF | 48 | 4.62 | 1,4,5,7,13 | 0 | n.a. | |
RECP35 | CASSLRGTGNTEAFF | 45 | 8.07 | 2,4,7,12,19,27,28,30 | 0 | n.a. |
CASGPGGPSTGELFF | 45 | 7.18 | 12,13 | 0.003 | 13 | |
CASSTSSTDTQYF | 39 | 5.15 | 2,6 | 0 | n.a. | |
RECP37 | CASSQDPQGALNEQFF | 48 | 17.13 | 4,5,7,11 | 0.009 | 4 |
CASSYRPESYNEQFF | 45 | 6.83 | 6 | 0.044 | 6 | |
CASGRGTSGPTGELFF | 48 | 4.95 | 12 | 0.003 | 12 | |
RECP40 | CASSVAYEQYF | 33 | 12.31 | 2,3,6,10,12,25,27 | 0.006 | 6 |
CASAVAYEQYF | 33 | 9.85 | 3,6,10,12,27 | 0 | n.a. | |
RECP42 | CASSVDHRAGKPYEQYF | 51 | 47.03 | 5,19 | 0.008 | 19 |
CATSVTTGGYTEAFF | 45 | 9.61 | 12,24 | 0.059 | 24 | |
CASSGGSTDTQYF | 39 | 8.75 | 4,19 | 0.004 | 19 | |
RECP43 | CASSTPGQGIGGYTF | 45 | 15.44 | 19 | 0 | n.a. |
CASSLQDRGPGGEQYV | 48 | 5.65 | 7,11 | 0 | n.a. | |
RECP45 | CASSLRNYDDRVGYYEQYF | 57 | 13.38 | 6,12,27,28 | 0.003 | 27 |
CASSLGTGDRSNQPQHF | 51 | 6.94 | 6,28 | 0.009 | 28 | |
RECP46 | CASTLQMNTEAFF | 39 | 5.62 | 6 | 0.005 | 6 |
RECP47 | CASGYEGGSTEAFF | 42 | 9.60 | 12 | 15.09 | 7,12 |
RECP48 | CASSSDGNTGELFF | 42 | 7.49 | 5 | 0 | n.a. |
RECP49 | CASQLGAATGYTF | 39 | 70.02 | 4,5,7,11 | 3.8 | 3,4,5,6,7,11 |
RECP50 | CASSPDRVETQYF | 39 | 12.15 | 7 | 0 | n.a. |
CVSSPGVPFTRFNTEAFF | 54 | 8.40 | 12 | 0 | n.a. | |
CASSLSSFQETQYF | 42 | 5.14 | 7,11 | 0 | n.a. |
CDR3, third complementarity region; RECP, Rasmussen Encephalitis Children’s Project; n.a., not applicable.