TABLE 2.
Oligonucleotide probes and primers
Primer | Sequencea |
---|---|
RNA I-specific probe | 5′-ATAACCAACGACATTAAATCTTTCAC-3′ |
RNA II-specific probe | 5′-TGTGTTATCTGTACGATTTAATGTCG-3′ |
Ef 5SrRNA-specific probe | 5′-AACAGGTGTATCCTTCTCGCTAT-3′ |
5′ RNA I EP-PCR | 5′-CGGGATCCAAATTGTTGAAGGTTTTATTATTAAATTGGCAGAATTTCAAATTATGATATAATTAAT-3′ |
3′ RNA I EP-PCR | 5′-GCTCTAGAAAAAAGCAATCCTACGGCGAATAGGATTGCTTTTTTTTACACTAGTTGCGACTTC-3′ |
19-stop | 5′-CCAATCTTTGTAGGATTGGTTCTGTAAATGATTTCTCG-3′ |
3′ RNA I-Xba | 5′-CGTCTAGATGAAAAAGCAATCCTACGGCGA-3′ |
RNA I Ext #2 | 5′-CGCCTCGATTGGAGGTGTGTTATTTGTGAAAGATTTAATGTCGTTGGTTATCGCACCAATCTTTGTAGGAT-3′ |
RNA I Pro | 5′-ATTGGCAGAATTTCAAATTATGATATAATTAATGCGGCAGCTCGCCTCGATTGGAGG-3′ |
RNA I Ext | 5′-AAATTGTTGAAGGTTTTATTATTAAATTGGCAGAATTTC-3′ |
RNAI-Sal-475 | 5′-GTCGACGTGTAAACGAGTTTACACGCTTAGAAAAGATCATAAAACAGCTAGATAAATTGTTGAAGGTTTTAT-3′ |
Restriction enzyme recognition sites are underlined.