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. 2004 Oct;186(19):6400–6408. doi: 10.1128/JB.186.19.6400-6408.2004

TABLE 2.

Oligonucleotide probes and primers

Primer Sequencea
RNA I-specific probe 5′-ATAACCAACGACATTAAATCTTTCAC-3′
RNA II-specific probe 5′-TGTGTTATCTGTACGATTTAATGTCG-3′
Ef 5SrRNA-specific probe 5′-AACAGGTGTATCCTTCTCGCTAT-3′
5′ RNA I EP-PCR 5′-CGGGATCCAAATTGTTGAAGGTTTTATTATTAAATTGGCAGAATTTCAAATTATGATATAATTAAT-3′
3′ RNA I EP-PCR 5′-GCTCTAGAAAAAAGCAATCCTACGGCGAATAGGATTGCTTTTTTTTACACTAGTTGCGACTTC-3′
19-stop 5′-CCAATCTTTGTAGGATTGGTTCTGTAAATGATTTCTCG-3′
3′ RNA I-Xba 5′-CGTCTAGATGAAAAAGCAATCCTACGGCGA-3′
RNA I Ext #2 5′-CGCCTCGATTGGAGGTGTGTTATTTGTGAAAGATTTAATGTCGTTGGTTATCGCACCAATCTTTGTAGGAT-3′
RNA I Pro 5′-ATTGGCAGAATTTCAAATTATGATATAATTAATGCGGCAGCTCGCCTCGATTGGAGG-3′
RNA I Ext 5′-AAATTGTTGAAGGTTTTATTATTAAATTGGCAGAATTTC-3′
RNAI-Sal-475 5′-GTCGACGTGTAAACGAGTTTACACGCTTAGAAAAGATCATAAAACAGCTAGATAAATTGTTGAAGGTTTTAT-3′
a

Restriction enzyme recognition sites are underlined.